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[171777_x_at]

Description C53183_rc /REP_DB=TREMBL Accession /GB=C53183 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk294h7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 99      4grp_highest_8_8 > 37      4grp_high_8_8 > 01      6grp_highest_nonorm > 72      6grp_total > 95      4grp_total > 07      6grp_highest_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 200
1 2 3 4 range
A 269.4
(3)
P 		268.6
(2.8)
P 		239
(-3)
P 		256.5
(0.5)
P 		30
B 292.3
(1)
P 		223.3
(-3)
P 		275.7
(-0)
P 		328.1
(3)
P 		105
C 383.1
(2.6)
P 		195.9
(-3)
P 		282.7
(-0.4)
P 		396.2
(3)
P 		200
avr 314.9
(2.3) 		229.3
(-3) 		265.8
(-0.8) 		326.9
(3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 310
1 2 3 4 5 6 range
A 470
(1.4)
P 		336.9
(-2.8)
P 		329
(-3)
P 		498.3
(2.2)
P 		522.5
(3)
P 		454.9
(0.9)
P 		194
B 299.4
(-3)
P 		432.1
(-0.4)
P 		512.6
(1.2)
P 		361.6
(-1.8)
P 		602.9
(3)
P 		514.4
(1.3)
P 		304
C 292.5
(-3)
P 		334.4
(-1.8)
P 		334.9
(-1.8)
P 		383.7
(-0.5)
P 		388.6
(-0.4)
P 		510.5
(3)
P 		218
avr 354
(-3) 		367.8
(-2.5) 		392.2
(-1.5) 		414.5
(-0.6) 		504.7
(3) 		493.3
(2.5) 		151
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 98.1
(3)
P 		58.3
(-0.9)
P 		62.5
(-0.5)
P 		37.5
(-3)
P 		61
B 93.2
(3)
P 		55.2
(-3)
P 		63.9
(-1.6)
P 		69.9
(-0.7)
P 		38
C 126.8
(3)
P 		56.3
(-3)
P 		98.5
(0.6)
P 		66.8
(-2.1)
P 		71
avr 106
(3) 		56.6
(-3) 		75
(-0.8) 		58.1
(-2.8) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 86.6
(-2)
P 		119.8
(0.4)
P 		71.7
(-3)
P 		126.4
(0.8)
P 		157.7
(3)
P 		110.8
(-0.3)
P 		86
B 104.2
(-2.7)
P 		143.8
(-1.1)
P 		124.5
(-1.8)
P 		95.8
(-3)
P 		245
(3)
P 		191.8
(0.9)
P 		149
C 108.4
(-1)
P 		102
(-1.4)
P 		85.2
(-2.5)
P 		77.2
(-3)
P 		125.8
(0.1)
P 		170.9
(3)
P 		94
avr 99.7
(-2.6) 		121.9
(-1) 		93.8
(-3) 		99.8
(-2.6) 		176.2
(3) 		157.8
(1.7) 		82
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171777_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27965
Sequence Type Exemplar sequence
Representative Public ID C53183 NCBI
Target Description C53183_rc /REP_DB=TREMBL Accession /GB=C53183 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk294h7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063203, NM_063202
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063202 NCBI Caenorhabditis elegans F18A1.6b (F18A1.6) mRNA, complete cds. A 
F18A1.6b.1 ENSEMBL cdna:known chromosome:CEL140:II:7658250:7662440:-1 gene:F18A1.6 A 
NM_063203 NCBI Caenorhabditis elegans F18A1.6a (F18A1.6) mRNA, complete cds. A 
F18A1.6b.2 ENSEMBL cdna:known chromosome:CEL140:II:7658265:7662206:-1 gene:F18A1.6 A 
F18A1.6a ENSEMBL cdna:known chromosome:CEL140:II:7658403:7662048:-1 gene:F18A1.6 A 
SNAP00000013710 ENSEMBL cdna:SNAP chromosome:CEL140:II:7658403:7662029:-1 None
GENEFINDER00000013724 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7658403:7662029:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7658356-7658608(-) 81.05 81.05
Public Domain and Genome References
Ensembl F18A1.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK67247 Hypothetical protein F18A1.6b [Caenorhabditis elegans] ref|NP_495603.1| F18A1.6b [Caenorhabditis elegans] 0.0
blast AAB63402 Hypothetical protein F18A1.6a [Caenorhabditis elegans] ref|NP_495604.1| F18A1.6a [Caenorhabditis elegans] 0.0
blast CAE67508 Hypothetical protein CBG13024 [Caenorhabditis briggsae] 0.0
blast CAA10464 F18A1.6 protein [Caenorhabditis briggsae] emb|CAA10308.1| F18A1.6 protein [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:171777_X_AT
tcgataatcttgccgctgcattcattgcttttgtccgggatgctagtcgccccggaatga
cgnaaaagagtgcggaacacgatccaaatcgttcagtttaactgaatgccgaaaatccct
ggatctgaccaacgatgctatgttcaacgcggttttagcgagagccgaaatacttcagcc
tgacatatccgaatttatttacatgtagagccaaagtccaaaccagtcatg

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGATAATCTTGCCGCTGCATTCAT 29 603 13 Antisense
CCGCTGCATTCATTGCTTTTGTCCG 359 263 25 Antisense
CTTTTGTCCGGGATGCTAGTCGCCC 565 219 40 Antisense
AGAGTGCGGAACACGATCCAAATCG 269 67 79 Antisense
ACTGAATGCCGAAAATCCCTGGATC 194 97 113 Antisense
ATCCCTGGATCTGACCAACGATGCT 21 39 127 Antisense
CGATGCTATGTTCAACGCGGTTTTA 326 247 145 Antisense
ACGCGGTTTTAGCGAGAGCCGAAAT 450 89 159 Antisense
GAGAGCCGAAATACTTCAGCCTGAC 242 395 172 Antisense
TCAGCCTGACATATCCGAATTTATT 73 625 187 Antisense
AGAGCCAAAGTCCAAACCAGTCATG 154 67 219 Antisense
Sequence Source Affymetrix Proprietary Database