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[171776_x_at]

Description C29306_rc /REP_DB=TREMBL Accession /GB=C29306 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk198f7 : 3prime end, single read.
Cluster 6grp_total > 78      4grp_total > 24      6grp_cgc > 49      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 70
(-3)
M 		85.2
(-1.6)
A 		114.1
(0.9)
A 		137
(3)
P 		67
B 44.8
(-3)
A 		89.9
(-0.6)
A 		104.9
(0.2)
A 		156.3
(3)
P 		112
C 92.8
(-3)
A 		98.6
(-2.3)
A 		132
(1.9)
P 		140.8
(3)
P 		48
avr 69.2
(-3) 		91.2
(-1.3) 		117
(0.8) 		144.7
(3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5753
1 2 3 4 5 6 range
A 52.2
(-3)
A 		79.2
(-3)
M 		162.3
(-2.9)
P 		293
(-2.7)
P 		1824.9
(-1.1)
P 		5800.4
(3)
P 		5748
B 84.8
(-3)
A 		47
(-3)
A 		161.1
(-2.9)
P 		349.5
(-2.7)
P 		1887.9
(-1)
P 		5697.2
(3)
P 		5650
C 80.5
(-3)
A 		81.9
(-3)
A 		223.8
(-2.8)
M 		299.5
(-2.8)
P 		2578.4
(-0.3)
P 		5592.9
(3)
P 		5512
avr 72.5
(-3) 		69.4
(-3) 		182.4
(-2.9) 		314
(-2.7) 		2097.1
(-0.8) 		5696.8
(3) 		5627
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 25.5
(0.7)
M 		18.5
(-3)
A 		29.8
(3)
A 		20.1
(-2.2)
P 		11
B 14.3
(-3)
A 		22.2
(-0.5)
A 		24.3
(0.2)
A 		33.3
(3)
P 		19
C 30.7
(-1.1)
A 		28.3
(-1.8)
A 		46
(3)
P 		23.7
(-3)
P 		22
avr 23.5
(-2.7) 		23
(-3) 		33.4
(3) 		25.7
(-1.4) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2115
1 2 3 4 5 6 range
A 9.6
(-3)
A 		28.2
(-2.9)
M 		35.3
(-2.9)
P 		74.3
(-2.7)
P 		550.7
(-0.7)
P 		1412.2
(3)
P 		1403
B 29.5
(-3)
A 		15.6
(-3)
A 		39.1
(-2.9)
P 		92.6
(-2.8)
P 		767
(-0.9)
P 		2124.5
(3)
P 		2109
C 29.9
(-3)
A 		25
(-3)
A 		57
(-2.9)
M 		60.2
(-2.9)
P 		834.3
(-0.4)
P 		1872.3
(3)
P 		1847
avr 23
(-3) 		22.9
(-3) 		43.8
(-2.9) 		75.7
(-2.8) 		717.3
(-0.7) 		1803
(3) 		1780
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171776_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27957
Sequence Type Exemplar sequence
Representative Public ID C29306 NCBI
Target Description C29306_rc /REP_DB=TREMBL Accession /GB=C29306 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk198f7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025989, NM_001025988
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C07G2.1a.1 ENSEMBL cdna:known chromosome:CEL140:III:4489325:4491347:1 gene:C07G2.1 None
SNAP00000003822 ENSEMBL cdna:SNAP chromosome:CEL140:III:4489329:4491228:1 None
GENEFINDER00000003827 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4489329:4491228:1 None
NM_001025988 NCBI Caenorhabditis elegans CEll Junction protein family member (cej-1) (cej-1) mRNA, complete cds. None
NM_001025989 NCBI Caenorhabditis elegans CEll Junction protein family member (cej-1) (cej-1) mRNA, complete cds. None
C07G2.1a.2 ENSEMBL cdna:known chromosome:CEL140:III:4489323:4491338:1 gene:C07G2.1 None
C07G2.1b ENSEMBL cdna:known chromosome:CEL140:III:4489325:4491363:1 gene:C07G2.1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4491037-4491331(+) 86.19 86.19
Public Domain and Genome References
Ensembl C07G2.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA83679 Hypothetical protein C07G2.1a [Caenorhabditis elegans] ref|NP_001021159.1| CEll Junction protein family member (cej-1) [Caenorhabditis elegans] sp|Q17802|CEJ1_CAEEL Cytokinesis protein cej-1 precursor (Cell junction protein 1) 0.0
blast CAE60360 Hypothetical protein CBG03957 [Caenorhabditis briggsae] 1.0E-130
Protein Domains
Database ID Description E-Value
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 4.4E-19
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 1.6E-18
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 6.0E-13
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 1.2E-5
Sequence
Target Sequence 
>C. ELEGANS:171776_X_AT
gaaattaccacagaagtcccagcttgtgtcgagggagccacggcaatcgagccatgctat
caacactacaagaactgcgtcaatggtcaagaggcaatcttcatctgcgaggacggattg
ttcttggccgcagagcaagctcgttgcgctccagccgatcaaatcgccgagtgtcatcaa
acgacggttcagtactactgaaagaagtaatctatcaaatgcctactcatcccagtgcca
tacacccaatgcatattacttacccatatcacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATTACCACAGAAGTCCCAGCTT 328 361 42 Antisense
CCAGCTTGTGTCGAGGGAGCCACGG 96 271 60 Antisense
AGCCACGGCAATCGAGCCATGCTAT 690 81 77 Antisense
CGAGCCATGCTATCAACACTACAAG 590 249 89 Antisense
AGAGGCAATCTTCATCTGCGAGGAC 656 67 131 Antisense
CTGCGAGGACGGATTGTTCTTGGCC 345 237 146 Antisense
TGTTCTTGGCCGCAGAGCAAGCTCG 118 561 160 Antisense
GCCGATCAAATCGCCGAGTGTCATC 96 285 195 Antisense
ATCTATCAAATGCCTACTCATCCCA 248 31 251 Antisense
GTGCCATACACCCAATGCATATTAC 541 477 276 Antisense
TGCATATTACTTACCCATATCACAA 238 579 291 Antisense
Sequence Source Affymetrix Proprietary Database