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[171775_x_at]

Description C55424_rc /REP_DB=TREMBL Accession /GB=C55424 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk204a1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 11      4grp_highest_8_8 > 50      4grp_high_8_8 > 40      6grp_highest_nonorm > 51      6grp_total > 23      4grp_total > 46      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1548
1 2 3 4 range
A 1267
(3)
P 		580.2
(-1)
P 		345.7
(-2.4)
P 		235.1
(-3)
P 		1032
B 1616.8
(3)
P 		492.9
(-1.8)
P 		377.8
(-2.3)
P 		221.5
(-3)
P 		1395
C 1761.3
(3)
P 		493.8
(-1.9)
P 		465
(-2)
P 		213.5
(-3)
P 		1548
avr 1548.4
(3) 		522.3
(-1.6) 		396.2
(-2.2) 		223.4
(-3) 		1325

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 751
1 2 3 4 5 6 range
A 642.6
(2.2)
P 		715.1
(3)
P 		547.1
(1.1)
P 		581.9
(1.5)
P 		314
(-1.6)
P 		191.6
(-3)
P 		524
B 583.5
(1.2)
P 		532.7
(0.6)
P 		756.3
(3)
P 		505.4
(0.4)
P 		412
(-0.6)
P 		187.6
(-3)
P 		569
C 938.8
(3)
P 		609.5
(-0)
P 		612
(-0)
P 		493.6
(-1.1)
P 		527.7
(-0.8)
P 		286.5
(-3)
P 		652
avr 721.6
(3) 		619.1
(1.8) 		638.5
(2) 		527
(0.7) 		417.9
(-0.6) 		221.9
(-3) 		500
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 549
1 2 3 4 range
A 461.3
(3)
P 		126
(-1.7)
P 		90.4
(-2.2)
P 		34.4
(-3)
P 		427
B 515.6
(3)
P 		121.7
(-2)
P 		87.5
(-2.5)
P 		47.2
(-3)
P 		468
C 583.1
(3)
P 		142
(-1.8)
P 		162.1
(-1.6)
P 		36
(-3)
P 		547
avr 520
(3) 		129.9
(-1.9) 		113.3
(-2.1) 		39.2
(-3) 		481

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 301
1 2 3 4 5 6 range
A 118.5
(-0.9)
P 		254.3
(3)
P 		119.1
(-0.9)
P 		147.6
(-0.1)
P 		94.8
(-1.6)
P 		46.6
(-3)
P 		208
B 203
(3)
P 		177.3
(1.8)
P 		183.6
(2.1)
P 		133.9
(-0.1)
P 		167.4
(1.4)
P 		70
(-3)
P 		133
C 348
(3)
P 		186
(-0.9)
P 		155.8
(-1.6)
P 		99.3
(-2.9)
P 		170.8
(-1.2)
P 		95.9
(-3)
P 		252
avr 223.2
(3) 		205.9
(2.3) 		152.8
(0.2) 		126.9
(-0.8) 		144.3
(-0.1) 		70.8
(-3) 		152
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171775_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27903
Sequence Type Exemplar sequence
Representative Public ID C55424 NCBI
Target Description C55424_rc /REP_DB=TREMBL Accession /GB=C55424 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk204a1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069625
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
ZK596.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:10900342:10901754:1 gene:ZK596.1 None
ZK596.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:10900344:10901341:1 gene:ZK596.1 None
GENEFINDER00000015321 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10900362:10901293:1 None
NM_069625 NCBI Caenorhabditis elegans ZK596.1 (ZK596.1) mRNA, complete cds. A 
SNAP00000015316 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10900362:10901293:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10901041-10901295(+) 82.41 82.41
Public Domain and Genome References
Gene Title
Ensembl ZK596.1
Entrez Gene 177982 Entrez gene
SwissProt Q23545 EMBL-EBI
WormBase CE06631 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93430 Hypothetical protein ZK596.1 [Caenorhabditis elegans] ref|NP_502026.1| ZK596.1 [Caenorhabditis elegans] 2.0E-71
blast CAE61954 Hypothetical protein CBG05953 [Caenorhabditis briggsae] 6.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR003677 EMBL-EBI Protein of unknown function, DUF 148 6.3E-66
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502026.1 1 2-24
ZK596.1.1 1 2-24
ZK596.1.2 1 2-24
SNAP00000015316 1 2-24
GENEFINDER00000015321 1 2-24
Sequence
Target Sequence 
>C. ELEGANS:171775_X_AT
cccagggggagacacggaggtcaaggaccattcggaggattcccaggaggccaccaagga
ggatttcccaggaggtaaccaaggaggattcggaggaaattcaaggaggatnttggttgg
aaacccagggtggatttcccatttcggaaatcagggtggaaaccaaggaggattcccatt
cggtaacccaggaaaccagggaggattcggtgg

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCAGGGGGAGACACGGAGGTCAAG 593 225 53 Antisense
GACACGGAGGTCAAGGACCATTCGG 206 367 63 Antisense
GGACCATTCGGAGGATTCCCAGGAG 164 523 77 Antisense
ATTCCCAGGAGGCCACCAAGGAGGA 576 5 91 Antisense
GAGGCCACCAAGGAGGATTTCCCAG 489 405 99 Antisense
GAGGATTTCCCAGGAGGTAACCAAG 322 403 111 Antisense
GAGGTAACCAAGGAGGATTCGGAGG 177 403 124 Antisense
TGGAAACCCAGGGTGGATTTCCCAT 278 547 170 Antisense
GGTGGATTTCCCATTTCGGAAATCA 472 497 181 Antisense
GAAACCAAGGAGGATTCCCATTCGG 42 187 211 Antisense
CAGGAAACCAGGGAGGATTCGGTGG 23 205 241 Antisense
Sequence Source Affymetrix Proprietary Database