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[171774_x_at]

Description CEC700_rc /REP_DB=TREMBL Accession /GB=C07700 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk157a9 : 3prime end, single read.
Cluster 6grp_total > 80      4grp_total > 06      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 4.3
(-3)
A 		4.8
(-2.2)
A 		8
(3)
A 		6.7
(0.9)
A 		4
B 31.8
(2)
A 		9.8
(-3)
A 		18.1
(-1.1)
A 		36.1
(3)
A 		26
C 4.6
(-3)
A 		8.7
(2.6)
A 		7.8
(1.4)
A 		9
(3)
A 		4
avr 13.6
(0.7) 		7.8
(-3) 		11.3
(-0.8) 		17.3
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 21
(-0.2)
A 		12.5
(-1.6)
A 		27
(0.7)
A 		40.9
(3)
A 		4.3
(-3)
A 		4.1
(-3)
A 		37
B 4.4
(-2.6)
A 		4.9
(-2.4)
A 		4.5
(-2.5)
A 		3.7
(-2.7)
A 		27
(3)
A 		2.6
(-3)
A 		24
C 4.5
(-2.9)
A 		6.7
(-2.2)
A 		4.4
(-3)
A 		22
(3)
A 		15
(0.6)
A 		4.3
(-3)
A 		18
avr 10
(-1) 		8
(-1.6) 		12
(-0.3) 		22.2
(3) 		15.4
(0.8) 		3.7
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.6
(0.3)
A 		1
(-3)
A 		2.1
(3)
A 		1
(-3)
A 		1
B 10.1
(3)
A 		2.4
(-3)
A 		4.2
(-1.6)
A 		7.7
(1.1)
A 		8
C 1.5
(-3)
A 		2.5
(2)
A 		2.7
(3)
A 		1.5
(-3)
A 		1
avr 4.4
(3) 		2
(-3) 		3
(-0.5) 		3.4
(0.5) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 3.9
(-1.1)
A 		4.4
(-0.8)
A 		5.9
(0.1)
A 		10.4
(3)
A 		1.3
(-2.8)
A 		1
(-3)
A 		9
B 1.5
(-2.7)
A 		1.6
(-2.6)
A 		1.1
(-2.9)
A 		1
(-3)
A 		11
(3)
A 		1
(-3)
A 		10
C 1.7
(-2.1)
A 		2.1
(-1.4)
A 		1.1
(-3)
A 		4.4
(2.2)
A 		4.9
(3)
A 		1.4
(-2.5)
A 		4
avr 2.4
(-1.3) 		2.7
(-0.9) 		2.7
(-0.9) 		5.3
(2.5) 		5.7
(3) 		1.1
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171774_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27612
Sequence Type Exemplar sequence
Representative Public ID CEC700 NCBI
Target Description CEC700_rc /REP_DB=TREMBL Accession /GB=C07700 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk157a9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEC700
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEC700 CEC700_rc /REP_DB=TREMBL Accession /GB=C07700 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk157a9 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:171774_X_AT
gattgtgcaaatcctccaagagctccaaggagactgtgctctccgagcgagaagtcatcg
ncatgtgttaatgcacatattgttnctaagcgatggagtcttgatttacagtatcctcta
aggatatcatcagaggttgcacagattttcgccaacttgtagaggagctggagccaagag
aagaggaatttnctcccatttaatacattgaaaagatcccacaacctaaagct

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTGTGCAAATCCTCCAAGAGCTC 701 433 20 Antisense
GCAAATCCTCCAAGAGCTCCAAGGA 591 317 26 Antisense
GCTCCAAGGAGACTGTGCTCTCCGA 489 297 41 Antisense
GTGCTCTCCGAGCGAGAAGTCATCG 520 479 55 Antisense
GGAGTCTTGATTTACAGTATCCTCT 238 517 114 Antisense
AAGGATATCATCAGAGGTTGCACAG 172 161 139 Antisense
GAGGTTGCACAGATTTTCGCCAACT 617 401 152 Antisense
ATTTTCGCCAACTTGTAGAGGAGCT 506 13 164 Antisense
GCCAACTTGTAGAGGAGCTGGAGCC 58 279 170 Antisense
GGAGCTGGAGCCAAGAGAAGAGGAA 627 521 183 Antisense
TGAAAAGATCCCACAACCTAAAGCT 208 571 228 Antisense
Sequence Source Affymetrix Proprietary Database