[Home] | [Total List]

[171773_x_at]

Description C32693_rc /REP_DB=TREMBL Accession /GB=C32693 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk334f4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 03      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 16      6grp_total > 24      4grp_total > 59      6grp_highest_sub > De      6grp_cgc > 21      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4548
1 2 3 4 range
A 11305.7
(2.3)
P 		10740.8
(1)
P 		11641.2
(3)
P 		8889.1
(-3)
P 		2752
B 10726.2
(-0.7)
P 		11319.7
(1.1)
P 		11961.5
(3)
P 		9946.7
(-3)
P 		2015
C 10575.1
(0.4)
P 		12578.6
(3)
P 		10859.7
(0.7)
P 		8030.3
(-3)
P 		4548
avr 10869
(1.4) 		11546.4
(3) 		11487.5
(2.9) 		8955.4
(-3) 		2591

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4984
1 2 3 4 5 6 range
A 9473.5
(3)
P 		7504.2
(-0.3)
P 		8846.3
(2)
P 		6424
(-2.1)
P 		5864.9
(-3)
P 		6237.9
(-2.4)
P 		3609
B 10112.8
(3)
P 		8717.5
(1.1)
P 		8911.1
(1.3)
P 		6413.5
(-2.1)
P 		5913.5
(-2.8)
P 		5774.8
(-3)
P 		4338
C 9365.5
(3)
P 		8151.8
(1.3)
P 		7525.1
(0.4)
P 		5952.3
(-1.8)
P 		6892.4
(-0.5)
P 		5128.5
(-3)
P 		4237
avr 9650.6
(3) 		8124.5
(0.7) 		8427.5
(1.1) 		6263.3
(-2.2) 		6223.6
(-2.2) 		5713.7
(-3) 		3937
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2815
1 2 3 4 range
A 4116.4
(3)
P 		2331.5
(-0.8)
P 		3043.2
(0.7)
P 		1301.2
(-3)
P 		2815
B 3420.5
(3)
P 		2795.7
(0.1)
P 		2771.8
(0)
P 		2119.6
(-3)
P 		1301
C 3500.7
(2.3)
P 		3616.4
(2.6)
P 		3784.9
(3)
P 		1354
(-3)
P 		2431
avr 3679.2
(3) 		2914.5
(0.8) 		3200
(1.6) 		1591.6
(-3) 		2088

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2322
1 2 3 4 5 6 range
A 1746.4
(-1.8)
P 		2668.9
(3)
P 		1926.5
(-0.9)
P 		1629.3
(-2.4)
P 		1769.8
(-1.7)
P 		1518.7
(-3)
P 		1150
B 3518.8
(3)
P 		2901.7
(1)
P 		2163.9
(-1.5)
P 		1698.7
(-3)
P 		2402.6
(-0.7)
P 		2153.4
(-1.5)
P 		1820
C 3471.4
(3)
P 		2487.4
(0.4)
P 		1915.3
(-1.1)
P 		1197
(-3)
P 		2230.3
(-0.3)
P 		1716.8
(-1.6)
P 		2274
avr 2912.2
(3) 		2686
(2) 		2001.9
(-0.9) 		1508.3
(-3) 		2134.2
(-0.3) 		1796.3
(-1.8) 		1404
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171773_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27780
Sequence Type Exemplar sequence
Representative Public ID C32693 NCBI
Target Description C32693_rc /REP_DB=TREMBL Accession /GB=C32693 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk334f4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077538(11), NM_077537(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077538 NCBI Caenorhabditis elegans Fourteen-Three-Three family member (ftt-2) (ftt-2) mRNA, complete cds. 11/11 A 
NM_077537 NCBI Caenorhabditis elegans Fourteen-Three-Three family member (ftt-2) (ftt-2) mRNA, complete cds. 11/11 A 
F52D10.3a.1 ENSEMBL cdna:known chromosome:CEL140:X:11603632:11605303:-1 gene:F52D10.3 11/11 A 
F52D10.3b.1 ENSEMBL cdna:known chromosome:CEL140:X:11603635:11605333:-1 gene:F52D10.3 11/11 A 
F52D10.3b.2 ENSEMBL cdna:known chromosome:CEL140:X:11603635:11605342:-1 gene:F52D10.3 11/11 A 
F52D10.3b.3 ENSEMBL cdna:known chromosome:CEL140:X:11603635:11605690:-1 gene:F52D10.3 11/11 A 
F52D10.3a.2 ENSEMBL cdna:known chromosome:CEL140:X:11603654:11605303:-1 gene:F52D10.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034608 5/11 Cross Hyb Matching Probes None
GENEFINDER00000034617 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Ensembl F52D10.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91474 Hypothetical protein F52D10.3a [Caenorhabditis elegans] ref|NP_509939.1| Fourteen-Three-Three family member (ftt-2) [Caenorhabditis elegans] sp|Q20655|14332_CAEEL 14-3-3-like protein 1.0E-129
blast CAE70609 Hypothetical protein CBG17289 [Caenorhabditis briggsae] 1.0E-128
blast AAR85527 14-3-3b protein [Meloidogyne incognita] 1.0E-118
blast CAC42300 Hypothetical protein F52D10.3b [Caenorhabditis elegans] ref|NP_509938.2| Fourteen-Three-Three family member (ftt-2) [Caenorhabditis elegans] 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR000308 EMBL-EBI 14-3-3 protein 1.0E-126
Pfam IPR000308 EMBL-EBI 14-3-3 protein 2.0E-115
Sequence
Target Sequence 
>C. ELEGANS:171773_X_AT
caccgatgacactgatgccaacgagacagagggaggcaactaactccttcacaccgacac
gttaccgccacacacccctcacntcgatcttgaaaatgataaataatactatttgtcata
tgatttatttattaccattgactagttaa

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACCGATGACACTGATGCCAACGAG 265 201 183 Antisense
CCGATGACACTGATGCCAACGAGAC 569 263 185 Antisense
GATGACACTGATGCCAACGAGACAG 184 413 187 Antisense
GACACTGATGCCAACGAGACAGAGG 447 367 190 Antisense
GATGCCAACGAGACAGAGGGAGGCA 407 415 196 Antisense
GAGGGAGGCAACTAACTCCTTCACA 433 401 211 Antisense
AGGGAGGCAACTAACTCCTTCACAC 139 59 212 Antisense
AATAATACTATTTGTCATATGATTT 363 171 284 Antisense
TTGTCATATGATTTATTTATTACCA 77 707 295 Antisense
TGATTTATTTATTACCATTGACTAG 383 563 303 Antisense
TTATTTATTACCATTGACTAGTTAA 661 673 307 Antisense
Sequence Source Affymetrix Proprietary Database