[Home] | [Total List]

[171772_x_at]

Description AV187184 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y17G7B.2C /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV187184 /WB_GENE_ID=Y17G7B.2C /WP=CE21379 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk508f9 : 5prime end, single read.
Cluster 6grp_total > 16      4grp_total > 54      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 191.6
(3)
A 		156.9
(0.1)
A 		119.8
(-3)
A 		121.8
(-2.8)
A 		72
B 218.8
(3)
A 		109.7
(-3)
A 		164.1
(-0)
A 		110.3
(-3)
A 		109
C 141.9
(3)
A 		129.4
(1.2)
A 		101.2
(-3)
A 		110.4
(-1.6)
A 		41
avr 184.1
(3) 		132
(-1.5) 		128.4
(-1.8) 		114.2
(-3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 272
1 2 3 4 5 6 range
A 151
(-0.5)
A 		241.9
(3)
A 		155.7
(-0.4)
A 		88.1
(-3)
A 		151.3
(-0.5)
A 		152.7
(-0.5)
A 		154
B 237.3
(3)
A 		133.8
(-2.1)
A 		116.5
(-3)
A 		163.3
(-0.7)
A 		121.3
(-2.8)
A 		133.1
(-2.2)
A 		121
C 359.6
(3)
P 		196.9
(-1.1)
A 		119.3
(-3)
A 		163.2
(-1.9)
A 		119.3
(-3)
A 		144.9
(-2.4)
A 		240
avr 249.3
(3) 		190.9
(0.1) 		130.5
(-3) 		138.2
(-2.6) 		130.6
(-3) 		143.6
(-2.3) 		119
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 69.8
(3)
A 		34.1
(-1.1)
A 		31.3
(-1.4)
A 		17.8
(-3)
A 		52
B 69.8
(3)
A 		27.1
(-2.5)
A 		38
(-1.1)
A 		23.5
(-3)
A 		46
C 47
(3)
A 		37.2
(0.9)
A 		35.3
(0.5)
A 		18.6
(-3)
A 		28
avr 62.2
(3) 		32.8
(-1.2) 		34.9
(-0.9) 		20
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 27.8
(-2.5)
A 		86
(3)
A 		33.9
(-1.9)
A 		22.3
(-3)
A 		45.6
(-0.8)
A 		37.2
(-1.6)
A 		64
B 82.6
(3)
A 		44.5
(-1.2)
A 		28.3
(-3)
A 		43.3
(-1.3)
A 		49.3
(-0.7)
A 		49.6
(-0.6)
A 		54
C 133.3
(3)
P 		60.1
(-1.3)
A 		30.4
(-3)
A 		32.8
(-2.9)
A 		38.6
(-2.5)
A 		48.5
(-1.9)
A 		103
avr 81.2
(3) 		63.5
(0.9) 		30.9
(-3) 		32.8
(-2.8) 		44.5
(-1.4) 		45.1
(-1.3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171772_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23300
Sequence Type Exemplar sequence
Representative Public ID AV187184 NCBI
Target Description AV187184 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y17G7B.2C /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV187184 /WB_GENE_ID=Y17G7B.2C /WP=CE21379 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk508f9 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064153, NM_064154, NM_064152
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064152 NCBI Caenorhabditis elegans Y17G7B.2b (Y17G7B.2) mRNA, complete cds. A 
GENEFINDER00000030400 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11980378:11988602:1 None
Y17G7B.2b ENSEMBL cdna:known chromosome:CEL140:II:11980329:11988764:1 gene:Y17G7B.2 A 
Y17G7B.2a ENSEMBL cdna:known chromosome:CEL140:II:11980378:11988353:1 gene:Y17G7B.2 A 
NM_064154 NCBI Caenorhabditis elegans Y17G7B.2a (Y17G7B.2) mRNA, complete cds. A 
NM_064153 NCBI Caenorhabditis elegans Y17G7B.2c (Y17G7B.2) mRNA, complete cds. A 
Y17G7B.2c ENSEMBL cdna:known chromosome:CEL140:II:11980378:11988353:1 gene:Y17G7B.2 A 
SNAP00000030317 ENSEMBL cdna:SNAP chromosome:CEL140:II:11980378:12001314:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11980375-11988351(+) 95.46 100.0
Public Domain and Genome References
Ensembl Y17G7B.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19468 Hypothetical protein Y17G7B.2b [Caenorhabditis elegans] ref|NP_496553.1| Y17G7B.2b [Caenorhabditis elegans] 0.0
blast CAA19449 Hypothetical protein Y17G7B.2a [Caenorhabditis elegans] ref|NP_496555.1| Y17G7B.2a [Caenorhabditis elegans] 0.0
blast CAE73557 Hypothetical protein CBG21026 [Caenorhabditis briggsae] 0.0
blast CAA19469 Hypothetical protein Y17G7B.2c [Caenorhabditis elegans] ref|NP_496554.1| Y17G7B.2c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003877 EMBL-EBI SPla/RYanodine receptor SPRY 2.8E-15
Pfam IPR003877 EMBL-EBI SPla/RYanodine receptor SPRY 7.6E-11
Pfam IPR003877 EMBL-EBI SPla/RYanodine receptor SPRY 7.6E-11
Pfam IPR003877 EMBL-EBI SPla/RYanodine receptor SPRY 2.8E-15
Pfam IPR003877 EMBL-EBI SPla/RYanodine receptor SPRY 7.6E-11
Pfam IPR001279 EMBL-EBI Beta-lactamase-like 4.6E-28
Pfam IPR002773 EMBL-EBI Deoxyhypusine synthase 1.0E-126
Pfam IPR003877 EMBL-EBI SPla/RYanodine receptor SPRY 3.3E-7
Sequence
Target Sequence 
>C. ELEGANS:171772_X_AT
taccggaagagccgattttcccgatttttctcgctttttcgttgttctacattgaaattt
tcgaaggcgacgttctcggctgtctaatccatcttccagtggacaaaaaactgcagattc
cggcaaatttgccatcggaaaagtatcttccagtatcacacaaaggcttcaatttgatat
catttaaagcgaattatttctttgaagtccaagaggagtccgcagatattgcaaagactc
tggtggaaatgcctggaagctatgtcgagttcttccacaatggaaaatcgtgcggaaaag
catatgagaatatctacgccggcgcctattacccgtcgatttccatatttaaatgtgcca
cagccaccatgaatctcggccctaaattccgtaatctgccacgtggtgccaccggaatcc
acgcgagagccgacgagcagcaacacgaacaaactctttcggatatgctgtatttggtgt
caaaagaagtgaatttggaccatccgccgcgtgtaaaacgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACCGGAAGAGCCGATTTTCCCGAT 707 649 826 Antisense
TTTCTCGCTTTTTCGTTGTTCTACA 396 671 852 Antisense
ATTTTCGAAGGCGACGTTCTCGGCT 195 15 882 Antisense
CTGTCTAATCCATCTTCCAGTGGAC 585 237 905 Antisense
AAGCTATGTCGAGTTCTTCCACAAT 20 151 1082 Antisense
TATTACCCGTCGATTTCCATATTTA 192 663 1152 Antisense
TAAATGTGCCACAGCCACCATGAAT 367 641 1175 Antisense
ATGAATCTCGGCCCTAAATTCCGTA 534 43 1194 Antisense
AAATTCCGTAATCTGCCACGTGGTG 358 113 1209 Antisense
AGCCGACGAGCAGCAACACGAACAA 637 83 1253 Antisense
GACCATCCGCCGCGTGTAAAACGAG 82 317 1323 Antisense
Sequence Source Affymetrix Proprietary Database