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[171771_x_at]

Description C31254_rc /REP_DB=TREMBL Accession /GB=C31254 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk274b2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 0      4grp_highest_8_8 > 13      4grp_high_8_8 > 31      6grp_highest_nonorm > 73      6grp_total > 60      4grp_total > 24      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 503
1 2 3 4 range
A 410.9
(-3)
P 		496.2
(-1.7)
P 		699.6
(1.4)
P 		808.3
(3)
P 		397
B 394.7
(-3)
P 		536.1
(-0.6)
P 		572.9
(0.1)
P 		743.3
(3)
P 		349
C 317.4
(-3)
P 		624.1
(0.7)
P 		709.2
(1.7)
P 		819.9
(3)
P 		503
avr 374.3
(-3) 		552.1
(-0.4) 		660.6
(1.1) 		790.5
(3) 		416

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 285
1 2 3 4 5 6 range
A 551.1
(0.1)
P 		434.1
(-3)
P 		660.6
(3)
P 		535.8
(-0.3)
P 		486.4
(-1.6)
P 		471.8
(-2)
P 		227
B 579
(0.8)
P 		490
(-1.3)
P 		418.4
(-3)
P 		669.7
(3)
P 		461.2
(-2)
P 		472.3
(-1.7)
P 		251
C 499.5
(1)
P 		385.2
(-3)
P 		495
(0.8)
P 		558.7
(3)
P 		437.7
(-1.2)
P 		497
(0.9)
P 		174
avr 543.2
(1.2) 		436.4
(-3) 		524.7
(0.5) 		588.1
(3) 		461.8
(-2) 		480.4
(-1.3) 		152
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 149.6
(0.3)
P 		107.7
(-3)
P 		182.9
(3)
P 		118.3
(-2.2)
P 		75
B 125.9
(-3)
P 		132.4
(-1.8)
P 		132.8
(-1.7)
P 		158.4
(3)
P 		33
C 105.1
(-3)
P 		179.4
(0.1)
P 		247.2
(3)
P 		138.2
(-1.6)
P 		142
avr 126.9
(-3) 		139.8
(-1.7) 		187.6
(3) 		138.3
(-1.9) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 101.6
(-3)
P 		154.4
(3)
P 		143.9
(1.8)
P 		135.9
(0.9)
P 		146.8
(2.1)
P 		114.9
(-1.5)
P 		53
B 201.4
(3)
P 		163.1
(0.7)
P 		101.6
(-3)
P 		177.4
(1.6)
P 		187.4
(2.2)
P 		176.1
(1.5)
P 		100
C 185.1
(3)
P 		117.5
(-2.6)
P 		126
(-1.9)
P 		112.4
(-3)
P 		141.6
(-0.6)
P 		166.4
(1.5)
P 		73
avr 162.7
(3) 		145
(0.3) 		123.8
(-3) 		141.9
(-0.2) 		158.6
(2.4) 		152.5
(1.4) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171771_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20763
Sequence Type Exemplar sequence
Representative Public ID C31254 NCBI
Target Description C31254_rc /REP_DB=TREMBL Accession /GB=C31254 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk274b2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062446(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062446 NCBI Caenorhabditis elegans F41C3.4 (F41C3.4) mRNA, complete cds. 11/11 None
F41C3.4 ENSEMBL cdna:known chromosome:CEL140:II:4740567:4741555:1 gene:F41C3.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4741206-4741491(+) 82.46 100.0
Public Domain and Genome References
Gene Title
Ensembl F41C3.4
Entrez Gene 173819 Entrez gene
SwissProt Q20263 EMBL-EBI
WormBase CE02732 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:258866_AT Got1-like family protein at
CANINE_2:CFAAFFX.19038.1.S1_S_AT similar to UPF0198 protein CGI-141 cfa
DROSOPHILA_2:1628409_AT dm
CHICKEN:GGA.2570.1.S1_AT golgi transport 1 homolog B (S. cerevisiae) gga
HG-U133B:222552_AT golgi transport 1 homolog B (S. cerevisiae) hs
HG-U133_PLUS_2:222552_AT golgi transport 1 homolog B (S. cerevisiae) hs
HU35KSUBA:RC_AA039758_AT golgi transport 1 homolog B (S. cerevisiae) hs
HU35KSUBC:RC_N33481_AT golgi transport 1 homolog B (S. cerevisiae) hs
HU35KSUBC:RC_AA256486_AT golgi transport 1 homolog B (S. cerevisiae) hs
HG-U133A:218193_S_AT golgi transport 1 homolog B (S. cerevisiae) hs
HG-U133_PLUS_2:218193_S_AT golgi transport 1 homolog B (S. cerevisiae) hs
HG-U133A_2:218193_S_AT golgi transport 1 homolog B (S. cerevisiae) hs
U133_X3P:G7705635_3P_A_AT golgi transport 1 homolog B (S. cerevisiae) hs
U133_X3P:G7018429_3P_X_AT golgi transport 1 homolog B (S. cerevisiae) hs
U133_X3P:G7018429_3P_AT golgi transport 1 homolog B (S. cerevisiae) hs
HG-U95B:48368_AT golgi transport 1 homolog B (S. cerevisiae) hs
HG-U95C:56591_AT golgi transport 1 homolog B (S. cerevisiae) hs
HG-U95C:64490_AT golgi transport 1 homolog B (S. cerevisiae) hs
MOUSE430A_2:1449859_AT golgi transport 1 homolog B (S. cerevisiae) mm
MOE430A:1449859_AT golgi transport 1 homolog B (S. cerevisiae) mm
MOUSE430_2:1449859_AT golgi transport 1 homolog B (S. cerevisiae) mm
MU11KSUBA:AA407875_S_AT golgi transport 1 homolog B (S. cerevisiae) mm
MG-U74AV2:92279_AT golgi transport 1 homolog B (S. cerevisiae) mm
MG-U74BV2:107906_AT golgi transport 1 homolog B (S. cerevisiae) mm
MG-U74CV2:166458_AT golgi transport 1 homolog B (S. cerevisiae) mm
MOE430A:1460583_AT golgi transport 1 homolog B (S. cerevisiae) mm
MOUSE430A_2:1460583_AT golgi transport 1 homolog B (S. cerevisiae) mm
MOUSE430_2:1460583_AT golgi transport 1 homolog B (S. cerevisiae) mm
MU19KSUBA:TC19601_AT Golgi transport 1 homolog B (S. cerevisiae) (Golt1b), mRNA mm
MU19KSUBB:TC34226_AT Golgi transport 1 homolog B (S. cerevisiae) (Golt1b), mRNA mm
RG-U34C:RC_AI070880_AT similar to CGI-141 protein; EST AA407874 (predicted) rn
RG-U34C:RC_AI179974_AT similar to CGI-141 protein; EST AA407874 (predicted) rn
RAE230A:1389077_AT similar to CGI-141 protein; EST AA407874 (predicted) rn
RAT230_2:1389077_AT similar to CGI-141 protein; EST AA407874 (predicted) rn
RAE230B:1383543_AT similar to CGI-141 protein; EST AA407874 (predicted) rn
RAT230_2:1383543_AT similar to CGI-141 protein; EST AA407874 (predicted) rn
YEAST_2:1777368_AT Evolutionarily conserved non-essential protein present in early Golgi cisternae that may be involved in ER-Golgi transport at a step after vesicle tethering to Golgi membranes, exhibits membrane topology similar to that of Sft2p Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16192 vesicle-mediated transport inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC46811 Hypothetical protein F41C3.4 [Caenorhabditis elegans] ref|NP_494847.1| F41C3.4 [Caenorhabditis elegans] sp|Q20263|YUW4_CAEEL Hypothetical UPF0198 protein F41C3.4 in chromosome II 6.0E-58
blast CAE73221 Hypothetical protein CBG20627 [Caenorhabditis briggsae] 7.0E-56
blast XP_396259 PREDICTED: similar to ENSANGP00000015000 [Apis mellifera] 7.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR007305 EMBL-EBI Got1-like protein 4.4E-65
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494847.1 3 6-25,38-60,65-82
F41C3.4 3 6-25,38-60,65-82
Sequence
Target Sequence 
>C. ELEGANS:171771_X_AT
tcttcccaaaaatctcaccaaaaatgggttctattttcttttttgttgaaaatattttct
cctgtgttgtcccttctcctctcatatcacgttcggttcaactacgatttcggccaaaat
gcacattttctgtgtaatattattcaattttaatttatttattattaaaaattttaaatt
ttatctcatttctaaaatatccctcagcctttgttgtataatacgctttcattttcttct
gttcctaggtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCCCAAAAATCTCACCAAAAAT 619 617 14 Antisense
ATCTCACCAAAAATGGGTTCTATTT 476 29 25 Antisense
GAAAATATTTTCTCCTGTGTTGTCC 329 351 61 Antisense
TCCTCTCATATCACGTTCGGTTCAA 127 593 90 Antisense
TTCGGTTCAACTACGATTTCGGCCA 154 657 105 Antisense
AACTACGATTTCGGCCAAAATGCAC 239 139 113 Antisense
TTCGGCCAAAATGCACATTTTCTGT 250 695 122 Antisense
CATTTCTAAAATATCCCTCAGCCTT 216 215 200 Antisense
TATCCCTCAGCCTTTGTTGTATAAT 418 657 211 Antisense
GTATAATACGCTTTCATTTTCTTCT 258 453 229 Antisense
TTTCATTTTCTTCTGTTCCTAGGTG 261 673 240 Antisense
Sequence Source Affymetrix Proprietary Database