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[171769_x_at]

Description AV203169 /REP_DB=TREMBL Accession /GB=AV203169 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk559h7 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 83      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 49      6grp_total > 73      4grp_total > 09      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13634
1 2 3 4 range
A 752
(-3)
P 		3015.5
(-2)
P 		3274.3
(-1.9)
P 		14300.1
(3)
P 		13548
B 753.9
(-3)
P 		3023
(-1.8)
P 		3456.5
(-1.5)
P 		11689.7
(3)
P 		10936
C 927.2
(-3)
P 		2973.4
(-2.1)
P 		2890.1
(-2.1)
P 		14385.6
(3)
P 		13458
avr 811
(-3) 		3004
(-2) 		3207
(-1.9) 		13458.5
(3) 		12648

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5937
1 2 3 4 5 6 range
A 1383.1
(-3)
P 		2820.5
(-1.5)
P 		7319.9
(3)
P 		5627.6
(1.3)
P 		4903.6
(0.6)
P 		4148.4
(-0.2)
P 		5937
B 1478.4
(-3)
P 		3367.5
(-0.9)
P 		6907.1
(3)
P 		5028.4
(0.9)
P 		4977.5
(0.9)
P 		4873.6
(0.8)
P 		5429
C 1731.9
(-3)
P 		3489.6
(-0.7)
P 		3116.5
(-1.2)
P 		6396.8
(3)
P 		5363.8
(1.7)
P 		5535.9
(1.9)
P 		4665
avr 1531.1
(-3) 		3225.9
(-0.6) 		5781.2
(3) 		5684.3
(2.9) 		5081.6
(2) 		4852.6
(1.7) 		4250
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2251
1 2 3 4 range
A 273.8
(-3)
P 		654.6
(-1.7)
P 		856
(-1.1)
P 		2093.3
(3)
P 		1820
B 240.4
(-3)
P 		746.6
(-1.7)
P 		801
(-1.5)
P 		2491.1
(3)
P 		2251
C 306.9
(-3)
P 		854.9
(-1.4)
P 		1007.3
(-1)
P 		2425.6
(3)
P 		2119
avr 273.7
(-3) 		752
(-1.6) 		888.1
(-1.2) 		2336.7
(3) 		2063

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1767
1 2 3 4 5 6 range
A 255
(-3)
P 		1003.1
(0.4)
P 		1594.1
(3)
P 		1427.3
(2.3)
P 		1479.7
(2.5)
P 		1010
(0.4)
P 		1339
B 514.4
(-3)
P 		1120.9
(-0.6)
P 		1677.3
(1.6)
P 		1331.8
(0.3)
P 		2022.3
(3)
P 		1817.3
(2.2)
P 		1508
C 641.9
(-3)
P 		1064.8
(-0.9)
P 		793.2
(-2.3)
P 		1286.4
(0.2)
P 		1735.7
(2.4)
P 		1853.2
(3)
P 		1211
avr 470.4
(-3) 		1062.9
(-0.2) 		1354.9
(1.2) 		1348.5
(1.1) 		1745.9
(3) 		1560.2
(2.1) 		1276
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171769_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20942
Sequence Type Exemplar sequence
Representative Public ID AV203169 NCBI
Target Description AV203169 /REP_DB=TREMBL Accession /GB=AV203169 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk559h7 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066035(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066035 NCBI Caenorhabditis elegans F23F12.12 (F23F12.12) mRNA, complete cds. 11/11 None
F23F12.12 ENSEMBL cdna:known chromosome:CEL140:III:6508577:6509377:1 gene:F23F12.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039909 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6508648-6509353(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F23F12.12
Entrez Gene 175927 Entrez gene
SwissProt Q95QJ3 EMBL-EBI
WormBase CE29282 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498436 F23F12.12 [Caenorhabditis elegans] gb|AAL02493.1| Hypothetical protein F23F12.12 [Caenorhabditis elegans] 7.0E-33
blast CAE66492 Hypothetical protein CBG11772 [Caenorhabditis briggsae] 2.0E-26
blast G88485 protein F23F12.1 [imported] - Caenorhabditis elegans 3.0E-17
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498436.1 1 4-22
F23F12.12 1 4-22
Sequence
Target Sequence 
>C. ELEGANS:171769_X_AT
attggcgagagtcatggtttcacattatatcgagcacagaaaccaagtcatcattctgga
tccgatagtcgaaacaaatctgaaaatgtggatctcgacgagacggacggtgactcgttc
gatcgaatgagaagtgtgcttggaggaatgaatccatctttgggattgatgcatcgtatc
agataccgcgagaaatgacagacgtcgaggctcgcggaaaaatatttacgactttctgat
ctcaagacttcgtggtatcatgggaaacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGGCGAGAGTCATGGTTTCACAT 372 3 19 Antisense
GGTTTCACATTATATCGAGCACAGA 135 507 34 Antisense
CGAGCACAGAAACCAAGTCATCATT 560 249 49 Antisense
GTCATCATTCTGGATCCGATAGTCG 414 467 65 Antisense
GATCTCGACGAGACGGACGGTGACT 407 417 109 Antisense
GACGGTGACTCGTTCGATCGAATGA 263 377 124 Antisense
GATGCATCGTATCAGATACCGCGAG 267 413 186 Antisense
AAATGACAGACGTCGAGGCTCGCGG 411 119 211 Antisense
AATATTTACGACTTTCTGATCTCAA 100 175 239 Antisense
TCTGATCTCAAGACTTCGTGGTATC 63 609 253 Antisense
GACTTCGTGGTATCATGGGAAACAT 559 369 264 Antisense
Sequence Source Affymetrix Proprietary Database