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[171767_x_at]

Description AU116500_rc /REP_DB=TREMBL Accession /GB=AU116500 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk745d9 : 3prime end, single read.
Cluster 6grp_total > 64      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 182
1 2 3 4 range
A 80.9
(-0.8)
A 		19.2
(-3)
A 		67.6
(-1.3)
A 		185.8
(3)
A 		167
B 78.9
(-0.1)
A 		69.1
(-2.2)
A 		93.4
(3)
A 		65.6
(-3)
A 		28
C 145.6
(0.7)
A 		111.5
(-0.8)
A 		58.1
(-3)
A 		200.7
(3)
P 		143
avr 101.8
(-0.5) 		66.6
(-3) 		73
(-2.5) 		150.7
(3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 14.5
(-2.1)
A 		18.7
(-1.6)
A 		60.5
(3)
A 		6.1
(-3)
A 		10
(-2.6)
A 		39.8
(0.7)
A 		54
B 18.9
(-0.4)
A 		8.5
(-2.8)
A 		7.5
(-3)
A 		27.3
(1.5)
A 		33.8
(3)
A 		8.1
(-2.9)
A 		26
C 5.6
(-2.7)
A 		8.5
(-2.3)
A 		26.5
(0.6)
A 		23.2
(0.1)
A 		3.9
(-3)
A 		41.4
(3)
A 		38
avr 13
(-2.7) 		11.9
(-3) 		31.5
(3) 		18.9
(-0.9) 		15.9
(-1.8) 		29.8
(2.5) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 29.4
(3)
A 		4.2
(-3)
A 		17.7
(0.2)
A 		27.2
(2.5)
A 		25
B 25.2
(3)
A 		17.1
(-1.3)
A 		21.6
(1.1)
A 		14
(-3)
A 		11
C 48.2
(3)
A 		32
(-0.5)
A 		20.3
(-3)
A 		33.8
(-0.1)
P 		28
avr 34.3
(3) 		17.8
(-3) 		19.9
(-2.2) 		25
(-0.4) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2.7
(-2.4)
A 		6.7
(-0.4)
A 		13.2
(3)
A 		1.6
(-3)
A 		3
(-2.3)
A 		9.7
(1.2)
A 		12
B 6.6
(-0.6)
A 		2.8
(-2.5)
A 		1.8
(-3)
A 		7.2
(-0.3)
A 		13.7
(3)
A 		3
(-2.4)
A 		12
C 2.1
(-2.6)
A 		2.6
(-2.4)
A 		6.7
(-0.4)
A 		4.7
(-1.4)
A 		1.3
(-3)
A 		13.9
(3)
A 		13
avr 3.8
(-3) 		4
(-2.8) 		7.2
(1) 		4.5
(-2.2) 		6
(-0.4) 		8.9
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171767_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20229
Sequence Type Exemplar sequence
Representative Public ID AU116500 NCBI
Target Description AU116500_rc /REP_DB=TREMBL Accession /GB=AU116500 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk745d9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AU116500
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AU116500 AU116500_rc /REP_DB=TREMBL Accession /GB=AU116500 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk745d9 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:15068828-15069146(+) 100.0 100.0
chrI:15076024-15076342(+) 99.69 99.69
Sequence
Target Sequence 
>C. ELEGANS:171767_X_AT
gaacagcgggttcaaacatttggttcatagacttgatcgacagatcaatggtctgaagct
accatttgagagattataactgaacgcctctaagttagaatctcgccttgtcaaggcgaa
aatttcttgcttcccggtgtcgggaggcatctctatctcgtggcaacacgagagcttatg
ccctatgtatggccttggcgtcgtagtgaattctgcgacgcttgccaacgccagatcact
ctggttcaatgtcggggcgctaaatcacttgcatacgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACAGCGGGTTCAAACATTTGGTT 558 349 18 Antisense
GGTTCATAGACTTGATCGACAGATC 400 507 39 Antisense
AAGTTAGAATCTCGCCTTGTCAAGG 90 157 109 Antisense
TTCTTGCTTCCCGGTGTCGGGAGGC 380 687 141 Antisense
GCAACACGAGAGCTTATGCCCTATG 493 317 180 Antisense
ATGCCCTATGTATGGCCTTGGCGTC 304 39 195 Antisense
GGCCTTGGCGTCGTAGTGAATTCTG 429 541 208 Antisense
AGTGAATTCTGCGACGCTTGCCAAC 53 61 222 Antisense
GCCAACGCCAGATCACTCTGGTTCA 90 279 241 Antisense
TCTGGTTCAATGTCGGGGCGCTAAA 637 607 257 Antisense
GGGCGCTAAATCACTTGCATACGAC 313 491 272 Antisense
Sequence Source Affymetrix Proprietary Database