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[171766_x_at]

Description CE16C6 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F29G6.3B /5_PRIME_EXT_DB=WormBase Gene ID /GB=M89101 /WB_GENE_ID=F29G6.3B /WP=CE18655 /CHR=X /FEA=Genomic Cluster /DEF=CEL16C6 Chris Martin sorted cDNA library Caenorhabditis elegans cDNA clone cm16c6 5prime, mRNA sequence.
Cluster 6grp_high1_10_10 > 02      4grp_highest_8_8 > 09      4grp_high_8_8 > 53      6grp_total > 23      4grp_total > 58      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 401
1 2 3 4 range
A 283.3
(-1.2)
P 		514.8
(2.3)
P 		560.4
(3)
P 		159.9
(-3)
P 		401
B 294.7
(-0.9)
P 		427.5
(3)
P 		414.6
(2.6)
P 		224.2
(-3)
P 		203
C 397.8
(0.4)
P 		524.4
(3)
P 		417.1
(0.8)
P 		233.9
(-3)
P 		291
avr 325.3
(-0.5) 		488.9
(3) 		464
(2.5) 		206
(-3) 		283

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 275
1 2 3 4 5 6 range
A 305
(3)
P 		281.1
(2.2)
P 		193.7
(-0.9)
P 		163.5
(-2)
M 		230
(0.4)
M 		134.3
(-3)
P 		171
B 387.1
(3)
P 		261.9
(0.3)
P 		302.9
(1.2)
P 		220.1
(-0.7)
P 		113.5
(-3)
P 		118.4
(-2.9)
P 		274
C 359.2
(3)
P 		303.2
(1.6)
P 		317.8
(2)
P 		230.1
(-0.1)
P 		140.3
(-2.3)
P 		112.4
(-3)
P 		247
avr 350.4
(3) 		282.1
(1.2) 		271.5
(0.9) 		204.6
(-0.8) 		161.3
(-2) 		121.7
(-3) 		229
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 103.2
(0.9)
P 		111.8
(1.3)
P 		146.5
(3)
P 		23.4
(-3)
P 		123
B 94
(1.8)
P 		105.6
(3)
P 		96.1
(2)
P 		47.8
(-3)
P 		58
C 131.7
(2)
P 		150.8
(3)
P 		145.4
(2.7)
P 		39.4
(-3)
P 		111
avr 109.6
(1.7) 		122.7
(2.6) 		129.3
(3) 		36.9
(-3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 56.2
(-0.9)
P 		100
(3)
P 		42.2
(-2.2)
P 		41.5
(-2.2)
M 		69.4
(0.3)
M 		32.7
(-3)
P 		67
B 134.7
(3)
P 		87.2
(-0.1)
P 		73.5
(-1.1)
P 		58.3
(-2.1)
P 		46.1
(-2.9)
P 		44.2
(-3)
P 		91
C 133.2
(3)
P 		92.5
(0.4)
P 		80.9
(-0.3)
P 		46.3
(-2.5)
P 		45.4
(-2.5)
P 		37.6
(-3)
P 		96
avr 108
(3) 		93.2
(1.7) 		65.5
(-0.7) 		48.7
(-2.1) 		53.6
(-1.7) 		38.2
(-3) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171766_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25941
Sequence Type Exemplar sequence
Representative Public ID CE16C6 NCBI
Target Description CE16C6 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F29G6.3B /5_PRIME_EXT_DB=WormBase Gene ID /GB=M89101 /WB_GENE_ID=F29G6.3B /WP=CE18655 /CHR=X /FEA=Genomic Cluster /DEF=CEL16C6 Chris Martin sorted cDNA library Caenorhabditis elegans cDNA clone cm16c6 5prime, mRNA sequence.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077522(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077522 NCBI Caenorhabditis elegans F29G6.3b (F29G6.3) mRNA, complete cds. 11/11 A 
SNAP00000010620 ENSEMBL cdna:SNAP chromosome:CEL140:X:11511659:11518861:-1 10/11 None
F29G6.3b.1 ENSEMBL cdna:known chromosome:CEL140:X:11512773:11518981:-1 gene:F29G6.3 11/11 None
F29G6.3b.2 ENSEMBL cdna:known chromosome:CEL140:X:11512773:11518987:-1 gene:F29G6.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000010622 5/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181340 3 1 NM_001029443 171853_x_at (9), 173626_s_at (11)
NM_077521 173626_s_at (11)
NM_077522 171766_x_at (11), 172455_x_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11512783-11518939(-) 100.0 100.0
Public Domain and Genome References
Ensembl F29G6.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01754 Hypothetical protein F29G6.3b [Caenorhabditis elegans] ref|NP_509923.1| F29G6.3b [Caenorhabditis elegans] 0.0
blast CAH10796 Hypothetical protein F29G6.3c [Caenorhabditis elegans] ref|NP_001024614.1| F29G6.3c [Caenorhabditis elegans] 0.0
blast CAE70625 Hypothetical protein CBG17311 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004019 EMBL-EBI YLP motif 5.8
Pfam IPR004019 EMBL-EBI YLP motif 36.0
Pfam IPR004019 EMBL-EBI YLP motif 2.9
Pfam IPR004019 EMBL-EBI YLP motif 73.0
Pfam IPR004019 EMBL-EBI YLP motif 28.0
Pfam IPR004019 EMBL-EBI YLP motif 5.8
Pfam IPR004019 EMBL-EBI YLP motif 36.0
Pfam IPR004019 EMBL-EBI YLP motif 2.9
Pfam IPR004019 EMBL-EBI YLP motif 73.0
Pfam IPR004019 EMBL-EBI YLP motif 28.0
Sequence
Target Sequence 
>C. ELEGANS:171766_X_AT
tcattacactccatctcatcaaattgtatccaatacatatgacgatatcgacactcatca
tggatatttgcctcaaattccgaggaaagaaaccgcagctcgtgttccattgggtcatca
ttttgtgccacaaattccacacaaagaagtggctcctgactacgatcatcatcaccacta
tgtgccatctgttcagcccaaagcgccaactccagccgtagattaccaacatcactattt
gccttcagtcaagaaaccaactagcactaccactgatatgattcgacaacaaaggaaaaa
aattctgaagagcactgatgatgatgaagatcaagaaaatcagtatgtggcgaaaccacc
agtctacacaaatgcattcgtaaaaccgtacaagacaattcctgatgaaccaacaaacta
catgctcaaaaatggaaaatctcgtaacaatggcattcctgaggagccatcgcaaccagt
tcccaaacctcgctctttcacctctcctcagcctgattattaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATTACACTCCATCTCATCAAATT 651 619 4849 Antisense
GACGATATCGACACTCATCATGGAT 135 377 4889 Antisense
AGCTCGTGTTCCATTGGGTCATCAT 647 79 4945 Antisense
TCCTGACTACGATCATCATCACCAC 699 593 5002 Antisense
ATCACCACTATGTGCCATCTGTTCA 338 29 5019 Antisense
CAACTCCAGCCGTAGATTACCAACA 601 187 5055 Antisense
CCAACATCACTATTTGCCTTCAGTC 140 277 5074 Antisense
AAACCAACTAGCACTACCACTGATA 245 125 5102 Antisense
GAAACCACCAGTCTACACAAATGCA 55 359 5200 Antisense
TGGCATTCCTGAGGAGCCATCGCAA 350 545 5299 Antisense
ACCTCTCCTCAGCCTGATTATTAGA 657 87 5348 Antisense
Sequence Source Affymetrix Proprietary Database