[Home] | [Total List]

[171765_x_at]

Description C45971 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F58D5.4A /5_PRIME_EXT_DB=WormBase Gene ID /GB=C45971 /WB_GENE_ID=F58D5.4A /WP=CE25020 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk404b8 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 67      6grp_highest_nonorm > 90      6grp_total > 68      4grp_total > 04      6grp_highest_sub > Da      6grp_cgc > 38      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 234
1 2 3 4 range
A 141.2
(-1.4)
P 		84.8
(-3)
A 		97.8
(-2.6)
A 		291.1
(3)
P 		206
B 123.5
(-0.9)
P 		75.2
(-2.6)
P 		63.5
(-3)
A 		231.1
(3)
P 		168
C 108.4
(-1.7)
P 		57.3
(-3)
A 		73.9
(-2.6)
A 		288.1
(3)
P 		231
avr 124.4
(-1.4) 		72.4
(-3) 		78.4
(-2.8) 		270.1
(3) 		198

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 268
1 2 3 4 5 6 range
A 174.9
(-0.2)
P 		99.2
(-2.8)
P 		106.8
(-2.5)
P 		93.4
(-3)
P 		164.3
(-0.5)
P 		266.2
(3)
P 		173
B 156.1
(-1.6)
P 		92.9
(-3)
P 		106.9
(-2.7)
P 		113.9
(-2.5)
P 		116.5
(-2.5)
P 		360.8
(3)
P 		268
C 107.9
(-2.8)
P 		147.9
(-1.7)
P 		117.3
(-2.5)
P 		115.5
(-2.6)
P 		100.9
(-3)
P 		317.5
(3)
P 		217
avr 146.3
(-1.9) 		113.3
(-2.8) 		110.3
(-2.9) 		107.6
(-3) 		127.2
(-2.4) 		314.8
(3) 		207
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 51.4
(3)
P 		18.4
(-3)
A 		25.6
(-1.7)
A 		42.6
(1.4)
P 		33
B 39.4
(1.3)
P 		18.6
(-2.3)
P 		14.7
(-3)
A 		49.2
(3)
P 		35
C 35.9
(0.6)
P 		16.5
(-3)
A 		25.8
(-1.3)
A 		48.6
(3)
P 		32
avr 42.2
(2) 		17.8
(-3) 		22
(-2.1) 		46.8
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 32.2
(-1.7)
P 		35.3
(-1.3)
P 		23.3
(-3)
P 		23.7
(-2.9)
P 		49.6
(0.8)
P 		64.8
(3)
P 		42
B 54.3
(-1.4)
P 		30.9
(-2.7)
P 		26
(-3)
P 		30.2
(-2.8)
P 		47.3
(-1.8)
P 		134.5
(3)
P 		109
C 40
(-1.8)
P 		45.1
(-1.4)
P 		29.9
(-2.5)
P 		23.2
(-3)
P 		32.6
(-2.3)
P 		106.3
(3)
P 		83
avr 42.2
(-1.7) 		37.1
(-2.1) 		26.4
(-2.9) 		25.7
(-3) 		43.2
(-1.6) 		101.9
(3) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171765_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23071
Sequence Type Exemplar sequence
Representative Public ID C45971 NCBI
Target Description C45971 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F58D5.4A /5_PRIME_EXT_DB=WormBase Gene ID /GB=C45971 /WB_GENE_ID=F58D5.4A /WP=CE25020 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk404b8 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026347(11), NM_001026348(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026347 NCBI Caenorhabditis elegans Kinase Suppressor of activated Ras family member (ksr-2) (ksr-2) mRNA, complete cds. 11/11 None
NM_001026348 NCBI Caenorhabditis elegans Kinase Suppressor of activated Ras family member (ksr-2) (ksr-2) mRNA, complete cds. 11/11 None
SNAP00000034699 ENSEMBL cdna:SNAP chromosome:CEL140:I:12053358:12065408:-1 10/11 None
GENEFINDER00000034710 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12053437:12060510:-1 11/11 None
F58D5.4b ENSEMBL cdna:known chromosome:CEL140:I:12055834:12067920:-1 gene:F58D5.4 11/11 A 
F58D5.4a ENSEMBL cdna:known chromosome:CEL140:I:12055834:12067920:-1 gene:F58D5.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_063036 1/11 Cross Hyb Matching Probes A B 
SNAP00000036565 1/11 Cross Hyb Matching Probes None
GENEFINDER00000036570 1/11 Cross Hyb Matching Probes None
C52E12.4 1/11 Cross Hyb Matching Probes A B 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12055841-12067836(-) 100.0 100.0
Public Domain and Genome References
Ensembl F58D5.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB70239 Hypothetical protein F58D5.4a [Caenorhabditis elegans] ref|NP_001021518.1| Kinase Suppressor of activated Ras family member (ksr-2) [Caenorhabditis elegans] gb|AAL79358.1| KSR-2a [Caenorhabditis elegans] 0.0
blast CAB70240 Hypothetical protein F58D5.4b [Caenorhabditis elegans] ref|NP_001021519.1| Kinase Suppressor of activated Ras family member (ksr-2) [Caenorhabditis elegans] gb|AAL79359.1| KSR-2b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.4.5.Forkhead DNA-binding domain All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; Forkhead DNA-binding domain 4.80000019073486
Pfam IPR000719 EMBL-EBI Protein kinase 2.8E-24
Pfam IPR000719 EMBL-EBI Protein kinase 2.4E-5
Pfam IPR000719 EMBL-EBI Protein kinase 2.8E-24
Pfam IPR000719 EMBL-EBI Protein kinase 2.4E-5
Pfam IPR000719 EMBL-EBI Protein kinase 2.8E-24
Pfam IPR000719 EMBL-EBI Protein kinase 2.4E-5
Pfam IPR000719 EMBL-EBI Protein kinase 5.9E-19
Pfam IPR000719 EMBL-EBI Protein kinase 2.4E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000034710 2 319-336,423-442
Sequence
Target Sequence 
>C. ELEGANS:171765_X_AT
agcttgagcggctggagaatccccgcagaaattgtacacttttaatcccaaatcactgga
ttgactatctttcgccggaaattgctggaaatttgatgattgattggaggggtgatgtgt
tgtttcaacatgaactaccgttttcacaagaatctgatgtttattcgtttggtacaattt
tcttcgaactcctgctccgccgtatgccaacgggctgtgactcttgggatcagaagctct
acgcgaaaatgtgcggccaaaaagcggcacttcaacggctcgacgcccagctgcaaaaaa
tcgacggaaaattgcacgaactgctgctggaatgctggtcgagccaaccggagaagcggc
cgagtttccaacaaattgtgaagcgaattacagttcaaatgccgagaaaagagtcgaata
agcagaagagacgcagcacggcacacgagaatccactgtttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTTGAGCGGCTGGAGAATCCCCG 311 77 1266 Antisense
GAATCCCCGCAGAAATTGTACACTT 290 329 1282 Antisense
TCACTGGATTGACTATCTTTCGCCG 300 625 1318 Antisense
TACAATTTTCTTCGAACTCCTGCTC 97 643 1438 Antisense
TCCGCCGTATGCCAACGGGCTGTGA 31 595 1461 Antisense
GGGCTGTGACTCTTGGGATCAGAAG 312 493 1477 Antisense
AAAAAGCGGCACTTCAACGGCTCGA 516 129 1524 Antisense
GAACTGCTGCTGGAATGCTGGTCGA 521 347 1583 Antisense
TCGAGCCAACCGGAGAAGCGGCCGA 509 599 1604 Antisense
AAGCGGCCGAGTTTCCAACAAATTG 573 149 1619 Antisense
ACGGCACACGAGAATCCACTGTTTT 401 95 1703 Antisense
Sequence Source Affymetrix Proprietary Database