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[171763_x_at]

Description AV202093 /REP_DB=TREMBL Accession /GB=AV202093 /CHR=3 /FEA=Genomic Cluster /REVCOMP /DEF=Caenorhabditis elegans cDNA clone:yk545f3 : 5prime end, single read.
Cluster 6grp_total > 74      4grp_total > 09      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 2.9
(-3)
A 		13.5
(-2)
A 		5.8
(-2.7)
A 		66.6
(3)
A 		64
B 3.1
(-3)
A 		4.8
(-2.8)
A 		10.8
(-2.1)
A 		57.4
(3)
A 		54
C 7.9
(-2.4)
A 		7.2
(-2.5)
A 		3.9
(-3)
A 		47.4
(3)
A 		44
avr 4.6
(-3) 		8.5
(-2.6) 		6.8
(-2.7) 		57.1
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 6.2
(-2.9)
A 		4.5
(-3)
A 		60.6
(1.6)
A 		6.6
(-2.8)
A 		77
(3)
A 		40
(-0.1)
A 		73
B 32
(-2.1)
A 		24.2
(-3)
A 		79
(3)
A 		50.4
(-0.1)
A 		48.1
(-0.4)
A 		36.5
(-1.7)
A 		55
C 3.1
(-3)
A 		5.4
(-2.9)
A 		3.6
(-3)
A 		111.3
(3)
A 		3.8
(-3)
A 		75.9
(1)
A 		108
avr 13.8
(-2.7) 		11.4
(-3) 		47.7
(1.9) 		56.1
(3) 		43
(1.2) 		50.8
(2.3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.1
(-3)
A 		2.9
(-1.7)
A 		1.5
(-2.7)
A 		9.7
(3)
A 		9
B 1
(-3)
A 		1.2
(-2.9)
A 		2.5
(-2.2)
A 		12.2
(3)
A 		11
C 2.6
(-1.8)
A 		2.1
(-2.3)
A 		1.3
(-3)
A 		8
(3)
A 		7
avr 1.6
(-3) 		2.1
(-2.6) 		1.8
(-2.9) 		10
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 1.1
(-3)
A 		1.6
(-2.9)
A 		13.2
(0.3)
A 		1.7
(-2.8)
A 		23.2
(3)
A 		9.7
(-0.7)
A 		22
B 11.1
(-1.4)
A 		8.1
(-3)
A 		19.2
(2.8)
A 		13.3
(-0.3)
A 		19.5
(3)
A 		13.6
(-0.1)
A 		11
C 1.2
(-2.9)
A 		1.6
(-2.8)
A 		0.9
(-3)
A 		22.4
(2.3)
A 		1.2
(-2.9)
A 		25.4
(3)
A 		25
avr 4.5
(-2.7) 		3.8
(-3) 		11.1
(0.5) 		12.5
(1.2) 		14.6
(2.2) 		16.2
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171763_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28225
Sequence Type Exemplar sequence
Representative Public ID AV202093 NCBI
Target Description AV202093 /REP_DB=TREMBL Accession /GB=AV202093 /CHR=3 /FEA=Genomic Cluster /REVCOMP /DEF=Caenorhabditis elegans cDNA clone:yk545f3 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000002015 ENSEMBL cdna:SNAP chromosome:CEL140:III:1179943:1212009:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064943 11/11 Negative Strand Matching Probes A 
SNAP00000002014 9/11 Negative Strand Matching Probes None
Y119D3B.13 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1183407-1184903(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29716 Hypothetical protein Y119D3B.14 [Caenorhabditis elegans] ref|NP_497345.1| Y119D3B.14 [Caenorhabditis elegans] 0.0
blast AAK29715 Hypothetical protein Y119D3B.16 [Caenorhabditis elegans] ref|NP_497347.2| Y119D3B.16 [Caenorhabditis elegans] 0.0
blast CAE69118 Hypothetical protein CBG15144 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000640 EMBL-EBI Elongation factor G, C-terminal 2.8E-5
Pfam IPR000795 EMBL-EBI Protein synthesis factor, GTP-binding 1.1E-25
Pfam IPR007379 EMBL-EBI Mitochondrial import inner membrane translocase, subunit Tim44 1.0E-15
Pfam IPR005517 EMBL-EBI Elongation factor G, domain IV 0.0020
Pfam IPR007834 EMBL-EBI DSS1/SEM1 6.0E-11
Pfam IPR004161 EMBL-EBI Elongation factor Tu, domain 2 7.0E-5
Sequence
Target Sequence 
>C. ELEGANS:171763_X_AT
tcaagttgtcagtctttctgctccaaaatgctccgaatcacgtgtgccacctcgggctcc
cgctgaaacacgctttttgcggacccaggagcttcctgagccaccaaactgcagctatcc
gatgggcagtcggaatcaatcaataatccacgtcgtgtacgttcacaagcccaccaggag
acctccgggccgcaagttgcagagtactgggaccggacgcaggtctcaaagtccgcagaa
gcctggcacaggctggatggggtcttcaaaatttccgcgtcatactgcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAGTTGTCAGTCTTTCTGCTCCA 214 633 25 Antisense
AAAATGCTCCGAATCACGTGTGCCA 463 131 49 Antisense
CTCCCGCTGAAACACGCTTTTTGCG 540 231 81 Antisense
TTTTGCGGACCCAGGAGCTTCCTGA 28 675 99 Antisense
CCACCAAACTGCAGCTATCCGATGG 455 271 125 Antisense
TCCACGTCGTGTACGTTCACAAGCC 171 589 171 Antisense
CTCCGGGCCGCAAGTTGCAGAGTAC 357 231 207 Antisense
TACTGGGACCGGACGCAGGTCTCAA 402 645 229 Antisense
CAGGTCTCAAAGTCCGCAGAAGCCT 631 205 244 Antisense
GCCTGGCACAGGCTGGATGGGGTCT 456 283 265 Antisense
CAAAATTTCCGCGTCATACTGCTTC 150 191 291 Antisense
Sequence Source Affymetrix Proprietary Database