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[171762_x_at]

Description AV175982_rc /REP_DB=TREMBL Accession /GB=AV175982 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk499e9 : 3prime end, single read.
Cluster 6grp_total > 88      4grp_total > 01      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 21.8
(-2.2)
A 		4.4
(-3)
A 		21.6
(-2.2)
A 		137.8
(3)
A 		133
B 8
(-3)
A 		20.7
(-1.6)
A 		47.5
(1.2)
A 		64.4
(3)
A 		56
C 43.3
(-1.1)
A 		20.1
(-2.4)
A 		10.3
(-3)
A 		113.4
(3)
A 		103
avr 24.4
(-2.4) 		15.1
(-3) 		26.5
(-2.2) 		105.2
(3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 186
1 2 3 4 5 6 range
A 60.9
(-0.7)
A 		9
(-2.9)
A 		7.7
(-3)
A 		56.7
(-0.9)
A 		102
(1)
A 		148.7
(3)
P 		141
B 12.7
(-3)
A 		66.6
(-1.2)
A 		21.7
(-2.7)
A 		30.8
(-2.4)
A 		99
(-0.1)
M 		193.5
(3)
P 		181
C 40.1
(-1.6)
A 		8.9
(-2.9)
A 		7.3
(-3)
A 		14.6
(-2.7)
A 		98.7
(0.8)
P 		152.4
(3)
P 		145
avr 37.9
(-2) 		28.2
(-2.4) 		12.2
(-3) 		34
(-2.1) 		99.9
(0.4) 		164.9
(3) 		153
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 7.9
(-0.8)
A 		0.9
(-3)
A 		5.6
(-1.5)
A 		20.2
(3)
A 		19
B 2.5
(-3)
A 		5.1
(-1.6)
A 		11
(1.6)
A 		13.7
(3)
A 		11
C 14.3
(1.1)
A 		5.8
(-2.1)
A 		3.6
(-3)
A 		19.1
(3)
A 		16
avr 8.2
(-1.1) 		3.9
(-3) 		6.7
(-1.8) 		17.7
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 11.2
(-1.3)
A 		3.2
(-2.7)
A 		1.7
(-3)
A 		14.4
(-0.8)
A 		30.8
(2.1)
A 		36.2
(3)
P 		35
B 4.4
(-3)
A 		22.2
(-1.4)
A 		5.3
(-2.9)
A 		8.2
(-2.7)
A 		40.2
(0.2)
M 		72.2
(3)
P 		68
C 14.9
(-1.4)
A 		2.7
(-2.9)
A 		1.9
(-3)
A 		2.9
(-2.9)
A 		31.9
(0.7)
P 		51
(3)
P 		49
avr 10.2
(-2.1) 		9.4
(-2.2) 		3
(-3) 		8.5
(-2.3) 		34.3
(0.7) 		53.1
(3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171762_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21839
Sequence Type Exemplar sequence
Representative Public ID AV175982 NCBI
Target Description AV175982_rc /REP_DB=TREMBL Accession /GB=AV175982 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk499e9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171592(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171592 NCBI Caenorhabditis elegans Y39B6A.16 (Y39B6A.16) mRNA, complete cds. 11/11 A 
Y39B6A.16 ENSEMBL cdna:known chromosome:CEL140:V:19101729:19103681:-1 gene:Y39B6A.16 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030550 3/11 Cross Hyb Matching Probes None
GENEFINDER00000030703 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19101738-19102496(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39B6A.16
Entrez Gene 3565475 Entrez gene
SwissProt Q8MYP1 EMBL-EBI
WormBase CE29858 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD31814 Hypothetical protein Y39B6A.16 [Caenorhabditis elegans] ref|NP_741682.1| Y39B6A.16 [Caenorhabditis elegans] 1.0E-157
blast T45028 hypothetical protein Y39B6B.b [imported] - Caenorhabditis elegans 1.0E-131
blast CAE57004 Hypothetical protein CBG24873 [Caenorhabditis briggsae] 2.0E-44
Sequence
Target Sequence 
>C. ELEGANS:171762_X_AT
tgagacgcccgttcaaattcagagaagatttacgaaggcacaggcgaaggcagaggccga
ggccgaggcgcctgccaaatcgccaggttcaaaagcacaaactacaaaatgcacgtcaaa
ttatcagtcacatccgccggcatccttcgagacaccgattcatcatccaccgaaaacttc
aatgggattcacgacaccggccaacccgccgcacatgttcccgtacttgaaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGACGCCCGTTCAAATTCAGAGA 623 567 14 Antisense
GATTTACGAAGGCACAGGCGAAGGC 399 407 40 Antisense
CAGGCGAAGGCAGAGGCCGAGGCCG 207 207 54 Antisense
GCCAAATCGCCAGGTTCAAAAGCAC 72 279 87 Antisense
AAATGCACGTCAAATTATCAGTCAC 251 119 120 Antisense
GTCAAATTATCAGTCACATCCGCCG 185 465 128 Antisense
TTCGAGACACCGATTCATCATCCAC 95 695 159 Antisense
GATTCATCATCCACCGAAAACTTCA 143 429 170 Antisense
TCATCCACCGAAAACTTCAATGGGA 586 617 176 Antisense
TTCAATGGGATTCACGACACCGGCC 539 639 191 Antisense
CGCACATGTTCCCGTACTTGAAAAA 529 253 223 Antisense
Sequence Source Affymetrix Proprietary Database