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[171760_x_at]

Description CEC8283_rc /REP_DB=TREMBL Accession /GB=C10828 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk154g12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 73      6grp_high1_10_10 > 37      4grp_highest_8_8 > 33      4grp_high_8_8 > 51      6grp_highest_nonorm > 76      6grp_total > 46      4grp_total > 60      6grp_highest_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 585
1 2 3 4 range
A 1305.8
(1.9)
P 		1380.8
(2.9)
P 		1385.6
(3)
P 		967.3
(-3)
P 		418
B 1355.6
(3)
P 		1185.1
(0.5)
P 		1337.5
(2.7)
P 		951.4
(-3)
P 		404
C 1288
(3)
P 		1221.1
(2.2)
P 		1158.1
(1.4)
P 		800.6
(-3)
P 		487
avr 1316.5
(3) 		1262.3
(2.2) 		1293.7
(2.7) 		906.4
(-3) 		410

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 583
1 2 3 4 5 6 range
A 1360.6
(3)
P 		1127.3
(0.2)
P 		867.1
(-3)
P 		895.9
(-2.6)
P 		953.9
(-1.9)
P 		1240.5
(1.5)
P 		494
B 1199.4
(3)
P 		1025.5
(0.5)
P 		1066.1
(1.1)
P 		1028.6
(0.6)
P 		777.5
(-3)
P 		1158.5
(2.4)
P 		422
C 1069.1
(0.5)
P 		1072.3
(0.5)
P 		1190.3
(3)
P 		936
(-2.3)
P 		902.4
(-3)
P 		1012.2
(-0.7)
P 		288
avr 1209.7
(3) 		1075
(0.6) 		1041.2
(-0) 		953.5
(-1.6) 		877.9
(-3) 		1137.1
(1.7) 		332
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 340
1 2 3 4 range
A 475.4
(3)
P 		299.7
(-0.2)
P 		362.2
(1)
P 		141.6
(-3)
P 		334
B 432.3
(3)
P 		292.7
(-0.6)
P 		309.9
(-0.2)
P 		202.7
(-3)
P 		230
C 426.4
(3)
P 		351.1
(1.4)
P 		403.6
(2.5)
P 		135
(-3)
P 		291
avr 444.7
(3) 		314.5
(0.3) 		358.6
(1.2) 		159.8
(-3) 		285

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 244
1 2 3 4 5 6 range
A 250.8
(-1.2)
P 		400.9
(3)
P 		188.8
(-3)
P 		227.2
(-1.9)
P 		287.8
(-0.2)
P 		302
(0.2)
P 		212
B 417.3
(2.5)
P 		341.3
(-0.1)
P 		258.9
(-3)
P 		272.4
(-2.5)
P 		315.9
(-1)
P 		432
(3)
P 		173
C 396.3
(3)
P 		327.2
(1)
P 		303
(0.3)
P 		188.2
(-3)
P 		292
(-0)
P 		338.9
(1.3)
P 		208
avr 354.8
(2.9) 		356.5
(2.9) 		250.2
(-2) 		229.3
(-3) 		298.6
(0.2) 		357.6
(3) 		128
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171760_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20991
Sequence Type Exemplar sequence
Representative Public ID CEC8283 NCBI
Target Description CEC8283_rc /REP_DB=TREMBL Accession /GB=C10828 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk154g12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171130(9), NM_171131(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171130 NCBI Caenorhabditis elegans F56D2.6a (F56D2.6) mRNA, complete cds. 9/11 A 
NM_171131 NCBI Caenorhabditis elegans F56D2.6b (F56D2.6) mRNA, complete cds. 11/11 A 
F56D2.6a ENSEMBL cdna:known chromosome:CEL140:III:5588989:5591659:-1 gene:F56D2.6 9/11 A 
F56D2.6b.2 ENSEMBL cdna:known chromosome:CEL140:III:5589058:5591671:-1 gene:F56D2.6 10/11 None
F56D2.6b.1 ENSEMBL cdna:known chromosome:CEL140:III:5589058:5591672:-1 gene:F56D2.6 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013290 7/11 Cross Hyb Matching Probes None
GENEFINDER00000013294 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5589132-5589471(-) 100.0 100.0
Public Domain and Genome References
Ensembl F56D2.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52678 Hypothetical protein F56D2.6a [Caenorhabditis elegans] ref|NP_741147.1| F56D2.6a [Caenorhabditis elegans] sp|Q20875|DHX15_CAEEL Putative pre-mRNA splicing factor ATP-dependent RNA helicase F56D2.6 0.0
blast CAE64301 Hypothetical protein CBG08977 [Caenorhabditis briggsae] 0.0
blast AAM48536 Hypothetical protein F56D2.6b [Caenorhabditis elegans] ref|NP_741148.2| F56D2.6b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007502 EMBL-EBI Helicase-associated region 3.3E-48
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 9.4E-13
Sequence
Target Sequence 
>C. ELEGANS:171760_X_AT
cagaactgtaactgatgtgcgccctgaatgatatgcgtttcaggctacttcaaatcgccc
ctcaatactatgatctcgacaacttcccagatggagacacgaaacggaagctgactactg
tgatgcagaccctgcagagaaacgctggcagaggctattgatgcctccgaatcatctgat
ctcatttcccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGAACTGTAACTGATGTGCGCCCT 231 205 52 Antisense
GTGCGCCCTGAATGATATGCGTTTC 593 477 68 Antisense
ATGCGTTTCAGGCTACTTCAAATCG 249 41 84 Antisense
TTCAAATCGCCCCTCAATACTATGA 165 687 100 Antisense
ATACTATGATCTCGACAACTTCCCA 619 23 116 Antisense
GACAACTTCCCAGATGGAGACACGA 37 365 129 Antisense
GACACGAAACGGAAGCTGACTACTG 555 367 147 Antisense
CTGACTACTGTGATGCAGACCCTGC 530 237 162 Antisense
GCAGACCCTGCAGAGAAACGCTGGC 364 313 176 Antisense
GGCTATTGATGCCTCCGAATCATCT 7 539 204 Antisense
CCGAATCATCTGATCTCATTTCCCC 204 263 218 Antisense
Sequence Source Affymetrix Proprietary Database