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[171759_x_at] Yeast Chl2p like

Description CEK006E2R_rc /REP_DB=TREMBL Accession /GB=D27950 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk6e2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 78      4grp_highest_8_8 > 45      4grp_high_8_8 > 09      6grp_highest_nonorm > 96      6grp_total > 68      4grp_total > 23      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 688
1 2 3 4 range
A 1171.8
(3)
P 		748.9
(-2)
P 		667
(-3)
P 		1013.8
(1.1)
P 		505
B 1023.9
(1.4)
P 		678.1
(-3)
P 		725.6
(-2.4)
P 		1151.3
(3)
P 		473
C 1355.3
(3)
P 		742.9
(-3)
P 		954.6
(-0.9)
P 		1039
(-0.1)
P 		612
avr 1183.7
(3) 		723.3
(-3) 		782.4
(-2.2) 		1068
(1.5) 		460

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 504
1 2 3 4 5 6 range
A 768.5
(-2.3)
P 		845.1
(-0.9)
P 		775.5
(-2.2)
P 		732.4
(-3)
P 		969.2
(1.3)
P 		1059.3
(3)
P 		327
B 965.2
(0.8)
P 		684.4
(-2.6)
P 		654.6
(-3)
P 		850.8
(-0.6)
P 		700.9
(-2.4)
P 		1146.5
(3)
P 		492
C 814.4
(-0.9)
P 		642.4
(-3)
P 		689.2
(-2.4)
P 		823.8
(-0.8)
P 		804.9
(-1)
P 		1126.8
(3)
P 		484
avr 849.4
(-0.9) 		724
(-2.7) 		706.4
(-3) 		802.3
(-1.6) 		825
(-1.2) 		1110.9
(3) 		405
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 300
1 2 3 4 range
A 426.7
(3)
P 		162.6
(-2.7)
P 		174.4
(-2.4)
P 		148.4
(-3)
P 		278
B 326.5
(3)
P 		167.5
(-3)
P 		168.1
(-3)
P 		245.3
(-0.1)
P 		159
C 448.7
(3)
P 		213.6
(-2.2)
P 		332.7
(0.5)
P 		175.2
(-3)
P 		274
avr 400.6
(3) 		181.2
(-3) 		225.1
(-1.8) 		189.6
(-2.8) 		219

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 286
1 2 3 4 5 6 range
A 141.7
(-3)
P 		300.5
(3)
P 		168.9
(-2)
P 		185.7
(-1.3)
P 		292.5
(2.7)
P 		257.9
(1.4)
P 		159
B 335.8
(1)
P 		227.8
(-1.5)
P 		159
(-3)
P 		225.3
(-1.5)
P 		284.8
(-0.2)
P 		427.5
(3)
P 		269
C 301.9
(0.9)
P 		196
(-2.1)
P 		175.4
(-2.7)
P 		165.7
(-3)
P 		260.4
(-0.3)
P 		377.2
(3)
P 		212
avr 259.8
(-0) 		241.4
(-0.6) 		167.8
(-3) 		192.2
(-2.2) 		279.2
(0.6) 		354.2
(3) 		186
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171759_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21479
Sequence Type Exemplar sequence
Representative Public ID CEK006E2R NCBI
Target Description CEK006E2R_rc /REP_DB=TREMBL Accession /GB=D27950 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk6e2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069440(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069440 NCBI Caenorhabditis elegans K08F4.1 (K08F4.1) mRNA, complete cds. 10/11 A 
K08F4.1.3 ENSEMBL cdna:known chromosome:CEL140:IV:10122091:10126615:-1 gene:K08F4.1 10/11 None
K08F4.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:10122469:10126615:-1 gene:K08F4.1 11/11 A 
K08F4.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:10122469:10126646:-1 gene:K08F4.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005854 5/11 Cross Hyb Matching Probes None
GENEFINDER00000005871 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10122484-10123401(-) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast Chl2p like
Ensembl K08F4.1
Entrez Gene 177879 Entrez gene
SwissProt Q21350 EMBL-EBI
WormBase CE06149 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:264600_AT AAA-type ATPase family protein at
ATGENOME1:17671_AT AAA-type ATPase family protein at
CANINE:1603519_AT similar to CTF18, chromosome transmission fidelity factor 18 homolog cfa
CANINE_2:CFAAFFX.29986.1.S1_AT similar to CTF18, chromosome transmission fidelity factor 18 homolog cfa
DROSOPHILA_2:1627253_AT cutlet dm
CHICKEN:GGA.5974.1.S1_AT CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) gga
CHICKEN:GGAAFFX.13117.1.S1_S_AT CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) gga
U133_X3P:HS.153850.0.S1_3P_A_AT CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) hs
HG-U133_PLUS_2:226569_S_AT CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) hs
HG-U133B:226569_S_AT CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) hs
HG-U95E:90566_AT CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) hs
MOE430A:1452098_AT CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) mm
MOUSE430A_2:1452098_AT CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) mm
MOUSE430_2:1452098_AT CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) mm
MOE430B:1447282_AT CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) (Chtf18), mRNA mm
MOUSE430_2:1447282_AT CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) (Chtf18), mRNA mm
MU19KSUBB:TC30095_AT CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) (Chtf18), mRNA mm
MU19KSUBB:TC30095_G_AT CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) (Chtf18), mRNA mm
RAE230A:1390640_AT CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) (predicted) rn
RAT230_2:1390640_AT CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) (predicted) rn
YEAST_2:1771500_AT Subunit of a complex with Ctf8p that shares some subunits with Replication Factor C and is required for sister chromatid cohesion; may have overlapping functions with Rad24p in the DNA damage replication checkpoint Sc
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93081 Hypothetical protein K08F4.1 [Caenorhabditis elegans] ref|NP_501841.1| K08F4.1 [Caenorhabditis elegans] 0.0
blast CAE59931 Hypothetical protein CBG03417 [Caenorhabditis briggsae] 0.0
blast XP_780624 PREDICTED: similar to CTF18, chromosome transmission fidelity factor 18 homolog [Strongylocentrotus purpuratus] 1.0E-65
Protein Domains
Database ID Description E-Value
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 1.2E-9
Sequence
Target Sequence 
>C. ELEGANS:171759_X_AT
gatcactcttatgcgtgttcgtctgacagagagtacctcgaatactgaacgaatttctac
gaatgccgataaaatcaaagcaatcgttgaatcagaaagcaaaaagaagaagagactatc
tgccggagcaatgaaaagattacacaatggaagactaacagatatagtatttaatcatca
ggatggagacagtagtgctgtcaaaaagaaagtcaccatgcaacaactcaactctatact
ttttggtgattcttaaccttaatttcaaagtatttgtttgtaaaatgacactatttttgc
tgtatactacttttttcagttgtttcagcgctgtatacacgttcctatgatcttttgctc
attttccgattttatcaccccaatgaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCACTCTTATGCGTGTTCGTCTG 321 421 51 Antisense
GTTCGTCTGACAGAGAGTACCTCGA 515 441 67 Antisense
AGAAGAGACTATCTGCCGGAGCAAT 658 71 158 Antisense
GAAAGTCACCATGCAACAACTCAAC 326 361 258 Antisense
GCAACAACTCAACTCTATACTTTTT 94 319 270 Antisense
GACACTATTTTTGCTGTATACTACT 590 365 337 Antisense
TACTTTTTTCAGTTGTTTCAGCGCT 259 645 358 Antisense
TTTCAGCGCTGTATACACGTTCCTA 677 671 373 Antisense
TACACGTTCCTATGATCTTTTGCTC 162 643 386 Antisense
GATCTTTTGCTCATTTTCCGATTTT 332 419 399 Antisense
TTCCGATTTTATCACCCCAATGAAC 408 693 414 Antisense
Sequence Source Affymetrix Proprietary Database