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[171754_x_at]

Description CEC509_rc /REP_DB=TREMBL Accession /GB=C07509 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk141b11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 07      4grp_highest_8_8 > 23      4grp_high_8_8 > 05      6grp_highest_nonorm > 40      6grp_total > 07      4grp_total > 03      6grp_highest_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4747
1 2 3 4 range
A 1286.9
(-1.6)
P 		642.8
(-3)
P 		787.1
(-2.7)
P 		3474.6
(3)
P 		2832
B 1015
(-2.7)
P 		934.3
(-2.8)
P 		804.2
(-3)
P 		5389.9
(3)
P 		4586
C 1318.2
(-1.9)
P 		887.2
(-2.8)
P 		799.5
(-3)
P 		3515.9
(3)
P 		2716
avr 1206.7
(-2.3) 		821.4
(-3) 		796.9
(-3) 		4126.8
(3) 		3330

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 489
1 2 3 4 5 6 range
A 886.1
(3)
P 		536.2
(-2.7)
P 		699.4
(-0.1)
P 		519.1
(-3)
P 		603.4
(-1.6)
P 		535.4
(-2.7)
P 		367
B 1003
(3)
P 		715.4
(-1)
P 		615.7
(-2.4)
P 		799.9
(0.2)
P 		615.3
(-2.4)
P 		571.4
(-3)
P 		432
C 896.9
(3)
P 		779.4
(1.2)
P 		545.4
(-2.5)
P 		594
(-1.7)
P 		513.6
(-3)
P 		635.4
(-1.1)
P 		383
avr 928.7
(3) 		677
(-1.3) 		620.2
(-2.3) 		637.7
(-2) 		577.4
(-3) 		580.7
(-2.9) 		351
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1009
1 2 3 4 range
A 468.6
(2.3)
P 		139.5
(-3)
P 		205.8
(-1.9)
P 		508.6
(3)
P 		369
B 323.7
(-2.1)
P 		230.8
(-2.7)
P 		186.4
(-3)
P 		1148.6
(3)
P 		962
C 436.4
(0.2)
P 		255.1
(-3)
P 		278.6
(-2.6)
P 		592.8
(3)
P 		338
avr 409.6
(-0.8) 		208.5
(-3) 		223.6
(-2.8) 		750
(3) 		542

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 230
1 2 3 4 5 6 range
A 163.4
(0.3)
P 		190.7
(3)
P 		152.3
(-0.8)
P 		131.7
(-2.9)
P 		182.1
(2.1)
P 		130.4
(-3)
P 		60
B 349
(3)
P 		238.1
(-0.3)
P 		149.5
(-3)
P 		211.9
(-1.1)
P 		250
(0)
P 		213.1
(-1.1)
P 		200
C 332.4
(3)
P 		237.8
(0.3)
P 		138.8
(-2.5)
P 		119.5
(-3)
P 		166.2
(-1.7)
P 		212.7
(-0.4)
P 		213
avr 281.6
(3) 		222.2
(0.4) 		146.9
(-3) 		154.4
(-2.7) 		199.4
(-0.7) 		185.4
(-1.3) 		135
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171754_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22341
Sequence Type Exemplar sequence
Representative Public ID CEC509 NCBI
Target Description CEC509_rc /REP_DB=TREMBL Accession /GB=C07509 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk141b11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078138
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000023755 ENSEMBL cdna:SNAP chromosome:CEL140:X:15330912:15333381:1 None
GENEFINDER00000023758 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15330912:15333610:1 None
NM_078138 NCBI Caenorhabditis elegans Y15E3A.4 (Y15E3A.4) mRNA, complete cds. A 
Y15E3A.4 ENSEMBL cdna:known chromosome:CEL140:X:15330881:15333867:1 gene:Y15E3A.4 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15333133-15333452(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y15E3A.4
Entrez Gene 181623 Entrez gene
SwissProt Q9U2R3 EMBL-EBI
WormBase CE21371 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60332 Hypothetical protein Y15E3A.4 [Caenorhabditis elegans] ref|NP_510539.1| Y15E3A.4 [Caenorhabditis elegans] 0.0
blast CAE63299 Hypothetical protein CBG07685 [Caenorhabditis briggsae] 0.0
blast AAC17018 Hypothetical protein H11E01.2 [Caenorhabditis elegans] ref|NP_508300.2| H11E01.2 [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510539.1 12 21-43,71-93,100-119,129-151,158-177,192-211,251-273,288-310,323-345,349-371,384-406,416-438
Y15E3A.4 12 21-43,71-93,100-119,129-151,158-177,192-211,251-273,288-310,323-345,349-371,384-406,416-438
SNAP00000023755 12 21-43,71-93,100-119,124-141,146-166,176-198,238-260,275-297,310-332,336-358,371-393,403-425
GENEFINDER00000023758 12 21-43,71-93,100-119,129-151,158-177,192-211,251-273,288-310,323-345,349-371,384-406,416-438
Sequence
Target Sequence 
>C. ELEGANS:171754_X_AT
gcagtcacaacacccttgaggagtggagaatcgttttccttacccacggaattcttctga
tcgttggaaatatcattttctgctactttgccaccgacgagcctgcagacttcacacgat
cagcaactggagaggaaatgaccgatgttcctccagaaagaagaaggtggctgaactgta
tcacttcatgtcttgaatagtgactttactgccctttttcatcacgaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGTCACAACACCCTTGAGGAGTG 520 311 18 Antisense
GAGGAGTGGAGAATCGTTTTCCTTA 658 403 35 Antisense
TTTCCTTACCCACGGAATTCTTCTG 90 669 52 Antisense
CACGGAATTCTTCTGATCGTTGGAA 705 197 62 Antisense
ATATCATTTTCTGCTACTTTGCCAC 107 21 87 Antisense
GACTTCACACGATCAGCAACTGGAG 26 373 125 Antisense
GGAAATGACCGATGTTCCTCCAGAA 544 527 151 Antisense
AGGTGGCTGAACTGTATCACTTCAT 573 55 182 Antisense
GTATCACTTCATGTCTTGAATAGTG 255 453 195 Antisense
GAATAGTGACTTTACTGCCCTTTTT 582 325 212 Antisense
TTACTGCCCTTTTTCATCACGAAAT 343 679 223 Antisense
Sequence Source Affymetrix Proprietary Database