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[171752_x_at]

Description CEK035FXR_rc /REP_DB=TREMBL Accession /GB=D33755 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk35f10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 70      4grp_highest_8_8 > 42      4grp_high_8_8 > 40      6grp_highest_nonorm > 65      6grp_total > 70      4grp_total > 55      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 673
1 2 3 4 range
A 951.3
(3)
P 		387.4
(-2.1)
P 		489.6
(-1.2)
P 		292.6
(-3)
P 		659
B 965.8
(3)
P 		434.7
(-2.1)
P 		509.1
(-1.4)
P 		339.3
(-3)
P 		627
C 796.4
(3)
P 		429.9
(-2.4)
P 		520.2
(-1.1)
P 		388.8
(-3)
P 		408
avr 904.5
(3) 		417.3
(-2.2) 		506.3
(-1.2) 		340.2
(-3) 		564

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1026
1 2 3 4 5 6 range
A 1058.1
(-0.8)
P 		1044.6
(-0.9)
P 		1013.9
(-1.1)
P 		1523.2
(3)
P 		1273.6
(1)
P 		785.3
(-3)
P 		738
B 1224.2
(-0.8)
P 		1005.9
(-2.4)
P 		1154.1
(-1.3)
P 		1726.6
(3)
P 		1119
(-1.6)
P 		931.2
(-3)
P 		795
C 978.5
(0.2)
P 		1216.4
(3)
P 		1090.7
(1.5)
P 		1096.5
(1.6)
P 		700.6
(-3)
P 		992
(0.4)
P 		516
avr 1086.9
(-1) 		1089
(-1) 		1086.2
(-1) 		1448.8
(3) 		1031.1
(-1.6) 		902.8
(-3) 		546
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 304
1 2 3 4 range
A 346.4
(3)
P 		84.1
(-2.2)
P 		128
(-1.3)
P 		42.8
(-3)
P 		304
B 308
(3)
P 		107.4
(-2.1)
P 		118
(-1.8)
P 		72.3
(-3)
P 		236
C 263.6
(3)
P 		123.6
(-1.2)
P 		181.3
(0.5)
P 		65.6
(-3)
P 		198
avr 306
(3) 		105
(-1.9) 		142.4
(-1) 		60.2
(-3) 		246

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 266
1 2 3 4 5 6 range
A 195
(-2.9)
P 		371.5
(2.5)
P 		220.8
(-2.1)
P 		386.3
(3)
P 		384.3
(2.9)
P 		191.2
(-3)
P 		195
B 426
(1.9)
P 		334.8
(-1.2)
P 		280.2
(-3)
P 		457.3
(3)
P 		454.6
(2.9)
P 		347.2
(-0.7)
P 		177
C 362.7
(2.7)
P 		371.2
(3)
P 		277.6
(-0.7)
P 		220.5
(-3)
P 		226.7
(-2.8)
P 		332.1
(1.4)
P 		151
avr 327.9
(1.1) 		359.2
(3) 		259.5
(-3) 		354.7
(2.7) 		355.2
(2.8) 		290.2
(-1.2) 		100
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171752_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21733
Sequence Type Exemplar sequence
Representative Public ID CEK035FXR NCBI
Target Description CEK035FXR_rc /REP_DB=TREMBL Accession /GB=D33755 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk35f10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171457(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171457 NCBI Caenorhabditis elegans C18C4.5a (C18C4.5) mRNA, complete cds. 11/11 A 
C18C4.5a ENSEMBL cdna:known chromosome:CEL140:V:5552920:5559876:-1 gene:C18C4.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171458 7/11 Cross Hyb Matching Probes None
GENEFINDER00000035611 1/11 Cross Hyb Matching Probes None
C18C4.5b 7/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178941 2 1 NM_171457 171752_x_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5552935-5553279(-) 100.0 100.0
Public Domain and Genome References
Ensembl C18C4.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM29662 Hypothetical protein C18C4.5a [Caenorhabditis elegans] ref|NP_741538.1| C18C4.5a [Caenorhabditis elegans] 0.0
blast AAM29663 Hypothetical protein C18C4.5b [Caenorhabditis elegans] ref|NP_741539.2| C18C4.5b [Caenorhabditis elegans] 0.0
blast T34107 hypothetical protein C18C4.5 - Caenorhabditis elegans 0.0
Sequence
Target Sequence 
>C. ELEGANS:171752_X_AT
gttcttcgacgcaagcttcaaggacttcagcagtaaaattctttttatttctcatttttt
aaattaatgttatagagattttttttttcattataattattgtgattcttttcgggttgt
tcttttctattttctgtgattttttttcttattcctagtgcttcttttatattacttatc
aattcctttaccattcacaaagtgccttaccaaaaattcacatcaatgctcattttgttg
ttccaatggttctctgaaaaatctgaaccatcctgaattatagcgacatttcttttcttt
tctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCTTCGACGCAAGCTTCAAGGAC 297 443 21 Antisense
TTGTGATTCTTTTCGGGTTGTTCTT 577 707 120 Antisense
GGTTGTTCTTTTCTATTTTCTGTGA 125 507 135 Antisense
TTCTGTGATTTTTTTTCTTATTCCT 40 695 152 Antisense
TTCTTATTCCTAGTGCTTCTTTTAT 286 691 166 Antisense
ACTTATCAATTCCTTTACCATTCAC 230 103 194 Antisense
TACCATTCACAAAGTGCCTTACCAA 141 649 209 Antisense
ATCAATGCTCATTTTGTTGTTCCAA 328 27 242 Antisense
CTCTGAAAAATCTGAACCATCCTGA 156 231 272 Antisense
GAACCATCCTGAATTATAGCGACAT 18 347 285 Antisense
ATAGCGACATTTCTTTTCTTTTCTG 126 23 300 Antisense
Sequence Source Affymetrix Proprietary Database