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[171751_x_at]

Description C57484_rc /REP_DB=TREMBL Accession /GB=C57484 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk304c3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 99      4grp_high_8_8 > 20      6grp_highest_nonorm > 91      6grp_total > 95      4grp_total > 20      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 152
1 2 3 4 range
A 149.8
(1.9)
P 		139.8
(0.1)
P 		155.6
(3)
P 		122.7
(-3)
A 		33
B 169.6
(1.1)
P 		141.4
(-0.9)
M 		112.6
(-3)
P 		195.1
(3)
P 		83
C 179.7
(-2.9)
P 		213.4
(-0.5)
P 		177.9
(-3)
P 		264.4
(3)
P 		87
avr 166.4
(-0.7) 		164.9
(-0.9) 		148.7
(-3) 		194.1
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 169.7
(0.5)
P 		146.4
(-0.7)
P 		103.1
(-3)
P 		170.1
(0.6)
P 		215.8
(3)
P 		200.1
(2.2)
P 		113
B 126.8
(-3)
P 		138.8
(-2.3)
P 		133.9
(-2.6)
P 		167.4
(-0.6)
P 		148.5
(-1.7)
P 		230.4
(3)
P 		104
C 148.3
(-1.9)
P 		116
(-3)
P 		130.2
(-2.5)
P 		199.4
(-0.2)
P 		296.7
(3)
P 		228.3
(0.7)
P 		181
avr 148.3
(-1.4) 		133.7
(-2.3) 		122.4
(-3) 		179
(0.5) 		220.3
(3) 		219.6
(3) 		98
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 54.6
(3)
P 		30.3
(-1)
P 		40.7
(0.7)
P 		18
(-3)
A 		37
B 54.1
(3)
P 		34.9
(-1.1)
M 		26.1
(-3)
P 		41.6
(0.3)
P 		28
C 59.5
(2.1)
P 		61.3
(2.8)
P 		62
(3)
P 		44.6
(-3)
P 		17
avr 56.1
(3) 		42.2
(-0.9) 		42.9
(-0.7) 		34.7
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 31.3
(-1.8)
P 		52.1
(1.2)
P 		22.5
(-3)
P 		43.1
(-0.1)
P 		65.1
(3)
P 		48.7
(0.7)
P 		43
B 44.1
(-1.7)
P 		46.2
(-1.5)
P 		32.5
(-3)
P 		44.3
(-1.7)
P 		60.3
(0.1)
P 		85.9
(3)
P 		53
C 55
(-0.9)
P 		35.4
(-2.8)
P 		33.1
(-3)
P 		40.1
(-2.3)
P 		96
(3)
P 		76.4
(1.1)
P 		63
avr 43.5
(-1.1) 		44.6
(-0.9) 		29.4
(-3) 		42.5
(-1.2) 		73.8
(3) 		70.3
(2.5) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171751_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20909
Sequence Type Exemplar sequence
Representative Public ID C57484 NCBI
Target Description C57484_rc /REP_DB=TREMBL Accession /GB=C57484 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk304c3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065584(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065584 NCBI Caenorhabditis elegans C38D4.1a (C38D4.1) mRNA, complete cds. 9/11 A 
C38D4.1a ENSEMBL cdna:known chromosome:CEL140:III:4783223:4785141:-1 gene:C38D4.1 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058747 4/11 Cross Hyb Matching Probes A 
NM_058748 3/11 Cross Hyb Matching Probes A 
NM_059086 3/11 Cross Hyb Matching Probes A 
NM_066901 4/11 Cross Hyb Matching Probes A 
NM_067277 4/11 Cross Hyb Matching Probes A 
NM_066970 1/11 Cross Hyb Matching Probes A 
SNAP00000029373 4/11 Cross Hyb Matching Probes None
GENEFINDER00000029381 4/11 Cross Hyb Matching Probes None
SNAP00000033390 3/11 Cross Hyb Matching Probes None
GENEFINDER00000033405 3/11 Cross Hyb Matching Probes None
SNAP00000028780 3/11 Cross Hyb Matching Probes None
GENEFINDER00000028814 3/11 Cross Hyb Matching Probes None
GENEFINDER00000026569 1/11 Cross Hyb Matching Probes None
SNAP00000026562 1/11 Cross Hyb Matching Probes None
SNAP00000018662 6/11 Cross Hyb Matching Probes None
GENEFINDER00000018676 6/11 Cross Hyb Matching Probes None
SNAP00000033490 1/11 Cross Hyb Matching Probes None
GENEFINDER00000033497 1/11 Cross Hyb Matching Probes None
W05F2.2a 4/11 Cross Hyb Matching Probes A 
W05F2.2b 3/11 Cross Hyb Matching Probes A 
W03G9.3 3/11 Cross Hyb Matching Probes A 
H04D03.1 4/11 Cross Hyb Matching Probes A 
K01G5.3 1/11 Cross Hyb Matching Probes A 
Y37D8A.12a.1 4/11 Cross Hyb Matching Probes A 
Y37D8A.12a.2 3/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175633 2 1 NM_065584 171751_x_at (9), 187832_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4961078-4961445(+) 92.0 92.0
chrIII:12880099-12880487(+) 97.82 97.82
chrIII:10751345-10751796(+) 94.91 94.91
chrI:3363893-3364259(-) 93.09 93.09
chrIII:4783232-4783555(-) 100.0 100.0
Public Domain and Genome References
Ensembl C38D4.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86323 Hypothetical protein C38D4.1a [Caenorhabditis elegans] ref|NP_497985.1| C38D4.1a [Caenorhabditis elegans] 0.0
blast NP_491487 W03G9.3 [Caenorhabditis elegans] gb|AAB96737.1| Hypothetical protein W03G9.3 [Caenorhabditis elegans] 0.0
blast CAA21531 Hypothetical protein Y37D8A.12a [Caenorhabditis elegans] ref|NP_499678.1| Y37D8A.12a [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497985.1 2 7-29,111-130
C38D4.1a 2 7-29,111-130
Sequence
Target Sequence 
>C. ELEGANS:171751_X_AT
gatgcttccagtcaccgaaaaggcaaccaaggagaagctccagattcagaagcaatcgcc
aatgccaggcaccccggaaaatacgtcgctcccaccgtccttgattaagaagaagaagaa
ggagtggacatcggaacaagcagcgccggaagcggtcgtcactgtggacaagccacgcga
ttgaagttcttctgagcccccgaccgcctctcaactcctctcaacgttccccacaattgt
atta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCTTCCAGTCACCGAAAAGGCA 143 413 13 Antisense
AAAAGGCAACCAAGGAGAAGCTCCA 705 125 30 Antisense
GAAGCTCCAGATTCAGAAGCAATCG 356 343 46 Antisense
AGAAGCAATCGCCAATGCCAGGCAC 661 73 60 Antisense
CTCCCACCGTCCTTGATTAAGAAGA 30 235 101 Antisense
AGTGGACATCGGAACAAGCAGCGCC 72 59 135 Antisense
AACAAGCAGCGCCGGAAGCGGTCGT 147 133 147 Antisense
GAAGCGGTCGTCACTGTGGACAAGC 601 341 161 Antisense
AAGCCACGCGATTGAAGTTCTTCTG 351 149 182 Antisense
GCGATTGAAGTTCTTCTGAGCCCCC 82 291 189 Antisense
CTCAACGTTCCCCACAATTGTATTA 229 227 232 Antisense
Sequence Source Affymetrix Proprietary Database