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[171749_x_at]

Description C37278_rc /REP_DB=TREMBL Accession /GB=C37278 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk462g3 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 26      4grp_highest_8_8 > 05      4grp_high_8_8 > 29      6grp_total > 25      4grp_total > 34      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 148
1 2 3 4 range
A 230.9
(-3)
P 		256.7
(-0.5)
P 		280.6
(1.7)
P 		293.9
(3)
P 		63
B 203.4
(-3)
P 		329.6
(3)
P 		304
(1.8)
P 		321.1
(2.6)
P 		126
C 240.1
(-1.7)
P 		351.8
(3)
P 		208.9
(-3)
P 		338.4
(2.4)
P 		143
avr 224.8
(-3) 		312.7
(2.7) 		264.5
(-0.4) 		317.8
(3) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 212
1 2 3 4 5 6 range
A 268.2
(0.7)
P 		350.6
(3)
P 		177.3
(-1.9)
P 		139
(-3)
A 		153.2
(-2.6)
P 		160.4
(-2.4)
P 		212
B 284.2
(3)
P 		257.4
(1.9)
P 		200.7
(-0.6)
P 		144.1
(-3)
P 		170.4
(-1.9)
P 		223.1
(0.4)
P 		140
C 322.5
(3)
P 		180.3
(-1.9)
P 		224.6
(-0.4)
P 		171.2
(-2.2)
M 		182.1
(-1.8)
P 		148
(-3)
P 		175
avr 291.6
(3) 		262.8
(1.8) 		200.9
(-0.9) 		151.4
(-3) 		168.6
(-2.3) 		177.2
(-1.9) 		140
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 84.1
(3)
P 		55.7
(-1.1)
P 		73.3
(1.4)
P 		43
(-3)
P 		41
B 64.9
(-3)
P 		81.4
(3)
P 		70.4
(-1)
P 		68.4
(-1.7)
P 		17
C 79.5
(0)
P 		101.2
(3)
P 		72.8
(-0.9)
P 		57.1
(-3)
P 		44
avr 76.2
(2.2) 		79.4
(3) 		72.2
(1.1) 		56.2
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 49.4
(-2.1)
P 		124.7
(3)
P 		38.6
(-2.8)
P 		35.3
(-3)
A 		46.2
(-2.3)
P 		39.1
(-2.7)
P 		89
B 98.9
(3)
P 		85.7
(1.7)
P 		48.7
(-2)
P 		38.2
(-3)
P 		69.2
(0.1)
P 		83.2
(1.4)
P 		61
C 119.5
(3)
P 		55
(-1.5)
P 		57.2
(-1.4)
P 		34.4
(-3)
M 		58.9
(-1.3)
P 		49.6
(-1.9)
P 		85
avr 89.3
(3) 		88.5
(2.9) 		48.2
(-1.6) 		36
(-3) 		58.1
(-0.5) 		57.3
(-0.6) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171749_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22471
Sequence Type Exemplar sequence
Representative Public ID C37278 NCBI
Target Description C37278_rc /REP_DB=TREMBL Accession /GB=C37278 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk462g3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075874(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075874 NCBI Caenorhabditis elegans W05H7.1 (W05H7.1) mRNA, complete cds. 11/11 A 
W05H7.1 ENSEMBL cdna:known chromosome:CEL140:X:1450763:1452235:1 gene:W05H7.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043341 4/11 Cross Hyb Matching Probes None
GENEFINDER00000043344 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1451509-1452225(+) 88.98 100.0
Public Domain and Genome References
Gene Title
Ensembl W05H7.1
Entrez Gene 180482 Entrez gene
SwissProt O02176 EMBL-EBI
WormBase CE28507 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508275 W05H7.1 [Caenorhabditis elegans] gb|AAB52863.2| Hypothetical protein W05H7.1 [Caenorhabditis elegans] 1.0E-43
Sequence
Target Sequence 
>C. ELEGANS:171749_X_AT
aaagttgactcagaagcggcgaaaaatgctcgtagaacgtgaggtgaagcggagacgggt
cgcgaagatgttctttgcctgcagagaacgccgccaagccttcccagacctggctaagca
gtatctccagagcatcagctgagccatctggcattatcataattattatctcaaatctct
gtaaaattgtattattatatgtagcacaacccctggctagtcaagccccccaccgcaata
tatttatata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGTTGACTCAGAAGCGGCGAAAA 185 121 34 Antisense
GTAGAACGTGAGGTGAAGCGGAGAC 25 457 65 Antisense
GGAGACGGGTCGCGAAGATGTTCTT 142 519 84 Antisense
GTCGCGAAGATGTTCTTTGCCTGCA 562 475 92 Antisense
GTTCTTTGCCTGCAGAGAACGCCGC 82 443 103 Antisense
CCTTCCCAGACCTGGCTAAGCAGTA 4 271 132 Antisense
GGCTAAGCAGTATCTCCAGAGCATC 247 539 145 Antisense
CAGAGCATCAGCTGAGCCATCTGGC 588 205 161 Antisense
GAGCCATCTGGCATTATCATAATTA 551 385 174 Antisense
TATATGTAGCACAACCCCTGGCTAG 550 661 229 Antisense
CCCCCCACCGCAATATATTTATATA 500 261 259 Antisense
Sequence Source Affymetrix Proprietary Database