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[171748_x_at]

Description CEK109C3R_rc /REP_DB=TREMBL Accession /GB=D72780 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk109c3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 08      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 38      6grp_total > 09      4grp_total > 58      6grp_highest_sub > De      6grp_cgc > 0      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3231
1 2 3 4 range
A 5755.2
(-0.2)
P 		6498.4
(1.8)
P 		6960.5
(3)
P 		4730.5
(-3)
P 		2230
B 6190.9
(1.9)
P 		6687.8
(3)
P 		6472.7
(2.5)
P 		4049.6
(-3)
P 		2638
C 5646.2
(-2.1)
P 		7082.1
(2.4)
P 		7281
(3)
P 		5351.6
(-3)
P 		1929
avr 5864.1
(0.2) 		6756.1
(2.6) 		6904.7
(3) 		4710.6
(-3) 		2194

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4065
1 2 3 4 5 6 range
A 8446.4
(3)
P 		4851.5
(-3)
P 		5825.3
(-1.4)
P 		5370.5
(-2.1)
P 		6255
(-0.7)
P 		6292.5
(-0.6)
P 		3595
B 7323.2
(3)
P 		5457.5
(-0.9)
P 		4462
(-3)
P 		6950
(2.2)
P 		5407.2
(-1)
P 		5129.7
(-1.6)
P 		2861
C 6481.3
(3)
P 		5250.4
(-0.5)
P 		5570.2
(0.4)
P 		5675.5
(0.7)
P 		5185.9
(-0.7)
P 		4381.3
(-3)
P 		2100
avr 7417
(3) 		5186.5
(-3) 		5285.8
(-2.7) 		5998.7
(-0.8) 		5616
(-1.8) 		5267.8
(-2.8) 		2231
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1845
1 2 3 4 range
A 2095.5
(3)
P 		1410.6
(0.1)
P 		1819.6
(1.8)
P 		692.5
(-3)
P 		1403
B 1974.2
(3)
P 		1651.7
(1.3)
P 		1499.9
(0.4)
P 		863
(-3)
P 		1111
C 1869.1
(0.5)
P 		2036.2
(1.2)
P 		2537.7
(3)
P 		902.4
(-3)
P 		1635
avr 1979.6
(3) 		1699.5
(1.6) 		1952.4
(2.9) 		819.3
(-3) 		1160

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1465
1 2 3 4 5 6 range
A 1557
(-0.2)
P 		1725.4
(1.4)
P 		1268.6
(-3)
P 		1362.1
(-2.1)
P 		1887.5
(3)
P 		1532
(-0.4)
P 		619
B 2548.1
(3)
P 		1816.6
(0)
P 		1083.5
(-3)
P 		1840.8
(0.1)
P 		2196.9
(1.6)
P 		1912.9
(0.4)
P 		1465
C 2402.3
(3)
P 		1602.1
(-0.8)
P 		1417.7
(-1.7)
P 		1141.3
(-3)
P 		1678.1
(-0.4)
P 		1466.7
(-1.5)
P 		1261
avr 2169.1
(3) 		1714.7
(0) 		1256.6
(-3) 		1448.1
(-1.7) 		1920.8
(1.4) 		1637.2
(-0.5) 		913
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171748_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22003
Sequence Type Exemplar sequence
Representative Public ID CEK109C3R NCBI
Target Description CEK109C3R_rc /REP_DB=TREMBL Accession /GB=D72780 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk109c3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071024(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071024 NCBI Caenorhabditis elegans UNCoordinated family member (unc-60) (unc-60) mRNA, complete cds. 11/11 None
C38C3.5a ENSEMBL cdna:known chromosome:CEL140:V:1474915:1476608:1 gene:C38C3.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040088 2/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178640 3 1 NM_071024 171748_x_at (11), 174141_at (11), 192015_s_at (11)
NM_071025 192015_s_at (11)
NM_071026 193210_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1476257-1476598(+) 100.0 100.0
Public Domain and Genome References
Ensembl C38C3.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL02461 Uncoordinated protein 60, isoform a [Caenorhabditis elegans] ref|NP_503425.2| UNCoordinated family member (unc-60) [Caenorhabditis elegans] sp|Q07750|ADF1_CAEEL Actin-depolymerizing factor 1 (Uncoordinated protein 60) gb|AAC14458.1| putative. cofilin/destrin homolog. This CDS encodes the first transcript produced from the unc-60 locus. Both transcripts exhibit cofilin/destrin homologies, and share only the 5'-most exon which encodes the initiator methionine [Caenorhabditis elegans] 5.0E-89
blast AAL02462 Uncoordinated protein 60, isoform b [Caenorhabditis elegans] ref|NP_503426.2| UNCoordinated family member (unc-60) [Caenorhabditis elegans] 5.0E-83
blast CAE62475 Hypothetical protein CBG06572 [Caenorhabditis briggsae] 1.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR002108 EMBL-EBI Actin-binding, cofilin/tropomyosin type 1.2E-61
Sequence
Target Sequence 
>C. ELEGANS:171748_X_AT
tacaatgtgccgggtaaccttccgtactatgaagaagttgagacatcccctcagattctc
agtatctttattgtttagtgaaatgcgtggtaaatcccttctcatttacgattatattct
ctctctcttgtaaagctttctatatttatatagtgtactttcccccactggaactctcaa
tctccatctcctcaccattctttttttttcaaatcttctattgcgtattcatttcccttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAATGTGCCGGGTAACCTTCCGT 691 639 29 Antisense
GGTAACCTTCCGTACTATGAAGAAG 372 401 41 Antisense
GAAGTTGAGACATCCCCTCAGATTC 502 335 62 Antisense
ATCCCCTCAGATTCTCAGTATCTTT 329 39 73 Antisense
AAATGCGTGGTAAATCCCTTCTCAT 580 119 109 Antisense
TACGATTATATTCTCTCTCTCTTGT 177 649 135 Antisense
CTCTCTCTCTTGTAAAGCTTTCTAT 397 231 147 Antisense
TTATATAGTGTACTTTCCCCCACTG 403 679 174 Antisense
CACTGGAACTCTCAATCTCCATCTC 205 199 194 Antisense
TCACCATTCTTTTTTTTTCAAATCT 56 627 220 Antisense
TTCTATTGCGTATTCATTTCCCTTC 111 691 244 Antisense
Sequence Source Affymetrix Proprietary Database