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[171747_x_at]

Description AU113348_rc /REP_DB=TREMBL Accession /GB=AU113348 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk706d1 : 3prime end, single read.
Cluster 6grp_total > 71      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 12.9
(-3)
A 		39.6
(-0.9)
A 		16
(-2.8)
A 		88.2
(3)
A 		75
B 11.2
(-2.3)
A 		38.7
(3)
A 		7.9
(-3)
A 		7.7
(-3)
A 		31
C 9.8
(-2.7)
A 		7.2
(-3)
A 		35.4
(0.1)
A 		61.3
(3)
A 		54
avr 11.3
(-3) 		28.5
(-0.5) 		19.8
(-1.8) 		52.4
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 56.1
(0.6)
A 		24.5
(-1.8)
A 		64.3
(1.3)
A 		86.1
(3)
A 		43.8
(-0.3)
A 		9.8
(-3)
A 		76
B 7.9
(-3)
A 		53.8
(2.5)
P 		45.9
(1.5)
A 		14.7
(-2.2)
A 		58.4
(3)
A 		57.4
(2.9)
A 		51
C 20
(-2.2)
A 		51.3
(-0.2)
P 		60.4
(0.3)
A 		103.6
(3)
P 		6.7
(-3)
A 		36.7
(-1.1)
A 		97
avr 28
(-3) 		43.2
(-0.7) 		56.9
(1.3) 		68.1
(3) 		36.3
(-1.8) 		34.6
(-2) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 4.7
(-2.7)
A 		8.6
(0)
A 		4.2
(-3)
A 		12.9
(3)
A 		9
B 3.6
(-1.5)
A 		9.6
(3)
A 		1.8
(-2.9)
A 		1.6
(-3)
A 		8
C 3.2
(-2.4)
A 		2.1
(-3)
A 		12.3
(3)
A 		10.3
(1.8)
A 		10
avr 3.8
(-3) 		6.8
(1) 		6.1
(0.1) 		8.3
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 10.3
(-0.6)
A 		8.7
(-1.1)
A 		14
(0.6)
A 		21.8
(3)
A 		13.2
(0.3)
A 		2.4
(-3)
A 		19
B 2.8
(-3)
A 		17.9
(1.3)
P 		11.2
(-0.6)
A 		3.9
(-2.7)
A 		23.7
(3)
A 		21.4
(2.3)
A 		21
C 7.4
(-1.3)
A 		15.6
(1.3)
P 		15.4
(1.3)
A 		20.8
(3)
P 		2.2
(-3)
A 		12.3
(0.3)
A 		19
avr 6.8
(-3) 		14.1
(2) 		13.5
(1.6) 		15.5
(3) 		13
(1.3) 		12
(0.6) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171747_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20831
Sequence Type Exemplar sequence
Representative Public ID AU113348 NCBI
Target Description AU113348_rc /REP_DB=TREMBL Accession /GB=AU113348 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk706d1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061914(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061914 NCBI Caenorhabditis elegans F22E5.8 (F22E5.8) mRNA, complete cds. 11/11 A 
GENEFINDER00000023631 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2640082:2642885:1 11/11 None
F22E5.8 ENSEMBL cdna:known chromosome:CEL140:II:2640082:2641898:1 gene:F22E5.8 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023605 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2641510-2641887(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F22E5.8
Entrez Gene 173610 Entrez gene
SwissProt O16706 EMBL-EBI
WormBase CE27994 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6813 potassium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
8076 voltage-gated potassium channel complex inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5249 voltage-gated potassium channel activity inferred from electronic annotation QuickGO AmiGO
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494315 F22E5.8 [Caenorhabditis elegans] gb|AAB66174.2| Hypothetical protein F22E5.8 [Caenorhabditis elegans] 1.0E-133
blast AAB37955 Hypothetical protein ZC239.15 [Caenorhabditis elegans] ref|NP_494481.1| ZC239.15 [Caenorhabditis elegans] 1.0E-92
blast NP_494315 F22E5.8 [Caenorhabditis elegans] gb|AAB66174.2| Hypothetical protein F22E5.8 [Caenorhabditis elegans] 1.0E-87
blast AAB37955 Hypothetical protein ZC239.15 [Caenorhabditis elegans] ref|NP_494481.1| ZC239.15 [Caenorhabditis elegans] 3.0E-76
blast T32066 hypothetical protein F22E5.7 - Caenorhabditis elegans 3.0E-66
blast AAB37956 Hypothetical protein ZC239.14 [Caenorhabditis elegans] ref|NP_494479.1| ZC239.14 [Caenorhabditis elegans] 5.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 5.7E-45
Sequence
Target Sequence 
>C. ELEGANS:171747_X_AT
ggatatgtgcatgataccgatagactgcatagtatgtcccttccaaaaaatttcaatgtg
cgtgccttcattgatacgcattccaatcagttcgagatttatttcaaggaacataaaaat
cataagttttggactgcaacgataatgacggaacataatgggcatcaacaaaattttgag
cttccgccgccaatatttgactggggacaaacttcatcttttttgctcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATATGTGCATGATACCGATAGAC 213 511 33 Antisense
TAGACTGCATAGTATGTCCCTTCCA 291 653 53 Antisense
AAAAATTTCAATGTGCGTGCCTTCA 435 129 78 Antisense
CGTGCCTTCATTGATACGCATTCCA 603 245 93 Antisense
GATACGCATTCCAATCAGTTCGAGA 442 423 105 Antisense
AATCATAAGTTTTGGACTGCAACGA 132 169 150 Antisense
TGGACTGCAACGATAATGACGGAAC 553 545 162 Antisense
CAACAAAATTTTGAGCTTCCGCCGC 610 189 198 Antisense
CTTCCGCCGCCAATATTTGACTGGG 476 219 213 Antisense
GACTGGGGACAAACTTCATCTTTTT 460 375 231 Antisense
GACAAACTTCATCTTTTTTGCTCGG 130 365 238 Antisense
Sequence Source Affymetrix Proprietary Database