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[171746_x_at]

Description CEK102EZR /REP_DB=TREMBL Accession /GB=D66551 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk102e12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 93      4grp_highest_8_8 > 04      4grp_high_8_8 > 37      6grp_highest_nonorm > 68      6grp_total > 95      4grp_total > 34      6grp_high1_sub > 04      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 510
1 2 3 4 range
A 854.9
(-3)
P 		1303
(3)
P 		986.1
(-1.2)
P 		1113.1
(0.5)
P 		448
B 792.6
(-3)
P 		1268
(3)
P 		1128.5
(1.2)
P 		1115.8
(1.1)
P 		475
C 894.7
(-3)
P 		1259.2
(3)
P 		1030.3
(-0.8)
P 		1126.6
(0.8)
P 		365
avr 847.4
(-3) 		1276.7
(3) 		1048.3
(-0.2) 		1118.5
(0.8) 		429

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1254
1 2 3 4 5 6 range
A 1638.3
(-0.5)
P 		1230.9
(-3)
P 		1748.5
(0.1)
P 		1918.4
(1.2)
P 		2218.1
(3)
P 		2058.4
(2)
P 		987
B 1579.4
(-1.8)
P 		1347.8
(-3)
P 		1562.4
(-1.9)
P 		1795.4
(-0.6)
P 		2485.3
(3)
P 		2131.1
(1.1)
P 		1138
C 1383.6
(-2.9)
P 		1373.3
(-3)
P 		1407.3
(-2.8)
P 		2242.8
(2.8)
P 		2279.6
(3)
P 		2095.3
(1.8)
P 		906
avr 1533.8
(-1.7) 		1317.3
(-3) 		1572.7
(-1.5) 		1985.5
(1) 		2327.7
(3) 		2094.9
(1.6) 		1010
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 199
1 2 3 4 range
A 311.3
(3)
P 		282.8
(1.8)
P 		257.8
(0.8)
P 		162.9
(-3)
P 		148
B 252.8
(-1.8)
P 		313.2
(3)
P 		261.5
(-1.1)
P 		237.8
(-3)
P 		75
C 296.2
(0.7)
P 		362
(3)
P 		359.1
(2.9)
P 		190
(-3)
P 		172
avr 286.8
(1.4) 		319.3
(3) 		292.8
(1.7) 		196.9
(-3) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 708
1 2 3 4 5 6 range
A 302
(-3)
P 		437.8
(-0.8)
P 		380.8
(-1.7)
P 		486.5
(0)
P 		669.3
(3)
P 		501.2
(0.3)
P 		367
B 549.6
(-1.4)
P 		448.6
(-2.3)
P 		379.4
(-3)
P 		475.5
(-2.1)
P 		1009.7
(3)
P 		794.7
(1)
P 		630
C 512.8
(-0.6)
P 		419
(-2)
P 		358.2
(-3)
P 		451
(-1.5)
P 		737.7
(3)
P 		701.4
(2.4)
P 		380
avr 454.8
(-1.9) 		435.1
(-2.1) 		372.8
(-3) 		471
(-1.6) 		805.6
(3) 		665.8
(1.1) 		433
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171746_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22081
Sequence Type Exemplar sequence
Representative Public ID CEK102EZR NCBI
Target Description CEK102EZR /REP_DB=TREMBL Accession /GB=D66551 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk102e12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077230(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077230 NCBI Caenorhabditis elegans F15G9.1a (F15G9.1) mRNA, complete cds. 10/11 A 
F15G9.1a ENSEMBL cdna:known chromosome:CEL140:X:9706938:9708479:1 gene:F15G9.1 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_077231 6/11 Cross Hyb Matching Probes A 
NM_182440 6/11 Cross Hyb Matching Probes A 
SNAP00000012491 6/11 Cross Hyb Matching Probes None
GENEFINDER00000012502 6/11 Cross Hyb Matching Probes None
F15G9.1b 6/11 Cross Hyb Matching Probes A 
F15G9.1c 6/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181184 3 1 NM_077230 171746_x_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9707891-9708469(+) 100.0 100.0
Public Domain and Genome References
Ensembl F15G9.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87331 Hypothetical protein F15G9.1a [Caenorhabditis elegans] ref|NP_509631.1| F15G9.1a [Caenorhabditis elegans] sp|Q10033|YSI1_CAEEL Hypothetical protein F15G9.1 in chromosome X 2.0E-90
blast CAD56568 Hypothetical protein F15G9.1c [Caenorhabditis elegans] ref|NP_872240.1| F15G9.1c [Caenorhabditis elegans] 6.0E-88
blast CAB54215 Hypothetical protein F15G9.1b [Caenorhabditis elegans] ref|NP_509632.1| F15G9.1b [Caenorhabditis elegans] 1.0E-81
Sequence
Target Sequence 
>C. ELEGANS:171746_X_AT
aaagctcggaggtattccatggcccccaaagtcgagcgatgtgaagaaggagggcggcga
cgctgaggcattgccaaagaaacgtgtcagcgacttgattgctcgtttcaacaccggagt
cgtcgaagagtcgaagaagaccgacgacgcttacaaaaacgagtacggagccggaaccaa
cgttggaaaagtttcaactcacaactttgcctaagtacccacacattgctggttctgtaa
ttttttgctttaaaaatcatattaatcttatttttttgaaacactgcttctcttcgaaaa
tac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCTCGGAGGTATTCCATGGCCC 17 123 26 Antisense
GGCCCCCAAAGTCGAGCGATGTGAA 598 537 46 Antisense
CGGCGACGCTGAGGCATTGCCAAAG 615 241 80 Antisense
ACGTGTCAGCGACTTGATTGCTCGT 565 95 107 Antisense
GATTGCTCGTTTCAACACCGGAGTC 508 433 122 Antisense
GAAGAAGACCGACGACGCTTACAAA 521 339 158 Antisense
GAGTACGGAGCCGGAACCAACGTTG 539 395 186 Antisense
GTTTCAACTCACAACTTTGCCTAAG 531 449 216 Antisense
AGTACCCACACATTGCTGGTTCTGT 455 61 239 Antisense
GCTGGTTCTGTAATTTTTTGCTTTA 462 295 253 Antisense
AAACACTGCTTCTCTTCGAAAATAC 296 127 304 Antisense
Sequence Source Affymetrix Proprietary Database