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[171743_x_at]

Description CEC559_rc /REP_DB=TREMBL Accession /GB=C07559 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk142c3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 59      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 84      6grp_total > 49      4grp_total > 04      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1790
1 2 3 4 range
A 877.4
(-1.1)
P 		565
(-2.6)
P 		477.6
(-3)
P 		1761.8
(3)
P 		1284
B 775.3
(-1.5)
P 		548.6
(-2.5)
P 		415.4
(-3)
P 		1891.1
(3)
P 		1476
C 994.3
(-1.1)
P 		467
(-2.9)
P 		422.6
(-3)
P 		2205.3
(3)
P 		1783
avr 882.3
(-1.2) 		526.9
(-2.6) 		438.5
(-3) 		1952.7
(3) 		1514

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 626
1 2 3 4 5 6 range
A 683.5
(3)
P 		579.3
(1.5)
P 		310
(-2.4)
P 		270.6
(-3)
P 		513.6
(0.5)
P 		662.5
(2.7)
P 		413
B 782.4
(2.6)
P 		562.2
(0.2)
P 		360.7
(-2)
P 		269.1
(-3)
P 		552.8
(0.1)
P 		818.8
(3)
P 		550
C 549.1
(0.7)
P 		697.4
(2.2)
P 		301.8
(-1.9)
P 		192.6
(-3)
P 		524.7
(0.4)
P 		776.2
(3)
P 		584
avr 671.7
(2) 		613
(1.4) 		324.2
(-2.1) 		244.1
(-3) 		530.4
(0.4) 		752.5
(3) 		508
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 307
1 2 3 4 range
A 319.5
(3)
P 		122.7
(-3)
P 		124.9
(-2.9)
P 		257.9
(1.1)
P 		197
B 247.2
(-0)
P 		135.5
(-2.2)
P 		96.3
(-3)
P 		403
(3)
P 		307
C 329.2
(1.9)
P 		134.3
(-3)
P 		147.3
(-2.7)
P 		371.9
(3)
P 		238
avr 298.6
(1.8) 		130.8
(-2.8) 		122.8
(-3) 		344.3
(3) 		222

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 267
1 2 3 4 5 6 range
A 126
(-0.5)
P 		206
(3)
P 		67.5
(-3)
P 		68.6
(-3)
P 		155
(0.8)
P 		161.3
(1.1)
P 		139
B 272.2
(2.2)
P 		187.1
(-0)
P 		87.6
(-2.6)
P 		71.3
(-3)
P 		224.6
(0.9)
P 		305.3
(3)
P 		234
C 203.5
(1.5)
P 		212.8
(1.7)
P 		76.8
(-2)
P 		38.7
(-3)
P 		169.8
(0.6)
P 		259.8
(3)
P 		221
avr 200.6
(1.6) 		202
(1.7) 		77.3
(-2.4) 		59.5
(-3) 		183.1
(1.1) 		242.1
(3) 		183
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171743_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21996
Sequence Type Exemplar sequence
Representative Public ID CEC559 NCBI
Target Description CEC559_rc /REP_DB=TREMBL Accession /GB=C07559 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk142c3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182355(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182355 NCBI Caenorhabditis elegans K03B4.7b (K03B4.7) mRNA, complete cds. 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071863 8/11 Cross Hyb Matching Probes A 
SNAP00000000712 6/11 Cross Hyb Matching Probes None
GENEFINDER00000000722 7/11 Cross Hyb Matching Probes None
K03B4.7a.1 8/11 Cross Hyb Matching Probes None
K03B4.7a.2 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178860 2 1 NM_182355 171743_x_at (11), 182695_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4691490-4691783(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO21423 Hypothetical protein K03B4.7b [Caenorhabditis elegans] ref|NP_872155.1| K03B4.7b [Caenorhabditis elegans] 6.0E-29
blast AAA97999 Hypothetical protein K03B4.7a [Caenorhabditis elegans] ref|NP_504264.1| K03B4.7a [Caenorhabditis elegans] 2.0E-14
blast CAE64174 Hypothetical protein CBG08797 [Caenorhabditis briggsae] 3.0E-10
Sequence
Target Sequence 
>C. ELEGANS:171743_X_AT
gagccgctacattctcaattctatcattttcaggatggctcaggatctggtgagagccct
gccgaagagcagctccgtcgtgtggttcgggatgttgacgaggaagcttccggggaagga
tccggcgccgccgaagtgacttcagttccagtcagatttgttcgttccgtcgatgccgaa
ggatccggctctggatccgatgagtaaattaccgccgccaagatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCCGCTACATTCTCAATTCTATC 661 385 21 Antisense
CATTCTCAATTCTATCATTTTCAGG 49 217 30 Antisense
TCATTTTCAGGATGGCTCAGGATCT 536 619 44 Antisense
TGAGAGCCCTGCCGAAGAGCAGCTC 267 569 71 Antisense
CTCCGTCGTGTGGTTCGGGATGTTG 171 235 93 Antisense
GAAGCTTCCGGGGAAGGATCCGGCG 472 341 123 Antisense
CGCCGCCGAAGTGACTTCAGTTCCA 689 253 146 Antisense
TCCAGTCAGATTTGTTCGTTCCGTC 19 591 167 Antisense
GTTCCGTCGATGCCGAAGGATCCGG 325 439 184 Antisense
ATCCGGCTCTGGATCCGATGAGTAA 225 39 203 Antisense
TGAGTAAATTACCGCCGCCAAGATC 287 503 221 Antisense
Sequence Source Affymetrix Proprietary Database