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[171739_x_at]

Description C58760_rc /REP_DB=TREMBL Accession /GB=C58760 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk377d12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 15      6grp_highest_nonorm > 41      6grp_total > 15      4grp_total > 53      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1001
1 2 3 4 range
A 1100
(3)
P 		797.3
(-0.1)
P 		544.7
(-2.7)
P 		512.7
(-3)
M 		587
B 831.6
(2.2)
P 		923.7
(3)
P 		653.3
(0.6)
P 		251
(-3)
M 		673
C 1251.7
(3)
P 		773
(-0.4)
P 		694.6
(-0.9)
P 		403.3
(-3)
A 		848
avr 1061.1
(3) 		831.3
(0.9) 		630.9
(-0.8) 		389
(-3) 		672

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 657
1 2 3 4 5 6 range
A 1040.8
(3)
P 		1012
(2.7)
P 		477.9
(-2.4)
P 		416.7
(-3)
P 		663.5
(-0.6)
P 		603.8
(-1.2)
P 		624
B 860
(2.4)
P 		900.4
(3)
P 		662.2
(-0.7)
P 		666.5
(-0.6)
P 		519.9
(-2.9)
P 		515.4
(-3)
P 		385
C 990.1
(3)
P 		776.5
(0.9)
P 		753
(0.7)
P 		657.7
(-0.3)
P 		383.6
(-3)
P 		392.3
(-2.9)
P 		607
avr 963.6
(3) 		896.3
(2.1) 		631
(-1.3) 		580.3
(-2) 		522.3
(-2.8) 		503.8
(-3) 		460
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 361
1 2 3 4 range
A 400.5
(3)
P 		173.1
(-1.2)
P 		142.4
(-1.8)
P 		75
(-3)
M 		326
B 265.2
(3)
P 		228.1
(1.9)
P 		151.4
(-0.2)
P 		53.5
(-3)
M 		212
C 414.3
(3)
P 		222.2
(-0.3)
P 		242.1
(0)
P 		68
(-3)
A 		346
avr 360
(3) 		207.8
(-0.1) 		178.6
(-0.7) 		65.5
(-3) 		295

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 263
1 2 3 4 5 6 range
A 191.9
(-0.9)
P 		359.9
(3)
P 		104.1
(-3)
P 		105.7
(-3)
P 		200.2
(-0.7)
P 		147
(-2)
P 		256
B 299.2
(3)
P 		299.7
(3)
P 		160.8
(-3)
P 		176.5
(-2.3)
P 		211.2
(-0.8)
P 		192.2
(-1.6)
P 		139
C 367
(3)
P 		236.9
(-0.2)
P 		191.7
(-1.3)
P 		132.3
(-2.8)
P 		124.1
(-3)
P 		131.3
(-2.8)
P 		243
avr 286
(2.5) 		298.8
(3) 		152.2
(-2.5) 		138.2
(-3) 		178.5
(-1.5) 		156.8
(-2.3) 		161
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171739_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22434
Sequence Type Exemplar sequence
Representative Public ID C58760 NCBI
Target Description C58760_rc /REP_DB=TREMBL Accession /GB=C58760 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk377d12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076262(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076262 NCBI Caenorhabditis elegans K03C7.1 (K03C7.1) mRNA, complete cds. 11/11 A 
GENEFINDER00000013648 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3811426:3816271:1 10/11 None
K03C7.1 ENSEMBL cdna:known chromosome:CEL140:X:3811426:3816392:1 gene:K03C7.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013643 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3815196-3816311(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K03C7.1
Entrez Gene 3565376 Entrez gene
SwissProt Q21186 EMBL-EBI
WormBase CE31195 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1625282_AT dm
DROSOPHILA_2:1625261_X_AT dm
DROSGENOME1:148184_AT dm
Protein Similarities
Method ID Description E-Value
blast AAA81138 Hypothetical protein K03C7.1 [Caenorhabditis elegans] ref|NP_508663.2| K03C7.1 [Caenorhabditis elegans] 1.0E-148
blast AAA81138 Hypothetical protein K03C7.1 [Caenorhabditis elegans] ref|NP_508663.2| K03C7.1 [Caenorhabditis elegans] 1.0E-138
blast CAE68488 Hypothetical protein CBG14291 [Caenorhabditis briggsae] 1.0E-134
blast CAE68488 Hypothetical protein CBG14291 [Caenorhabditis briggsae] 1.0E-129
Sequence
Target Sequence 
>C. ELEGANS:171739_X_AT
agagggcagcgagttcggatcgttccgaccgctggtaacaaatgcaacaggaggatattt
gatgtcctacgcagatgagatgaagtgcaaaaatattattcctttccagactgcaccgtc
gctagtcagataaaaggaatttctctccaatgtacaccacacatgttcattttccatttg
aaaatgtttatcaattcctatata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGGGCAGCGAGTTCGGATCGTTC 265 69 46 Antisense
ATCGTTCCGACCGCTGGTAACAAAT 242 35 64 Antisense
GATATTTGATGTCCTACGCAGATGA 268 427 99 Antisense
AATATTATTCCTTTCCAGACTGCAC 8 175 137 Antisense
GACTGCACCGTCGCTAGTCAGATAA 330 375 154 Antisense
GCACCGTCGCTAGTCAGATAAAAGG 425 313 158 Antisense
AAGGAATTTCTCTCCAATGTACACC 304 161 179 Antisense
TTTCTCTCCAATGTACACCACACAT 578 671 185 Antisense
GTACACCACACATGTTCATTTTCCA 352 461 197 Antisense
CACCACACATGTTCATTTTCCATTT 231 203 200 Antisense
GAAAATGTTTATCAATTCCTATATA 71 355 225 Antisense
Sequence Source Affymetrix Proprietary Database