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[171738_x_at]

Description g790603 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=B0350.2C /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=B0350.2C /WP=CE06704 /CHR=4 /FEA=Genomic Cluster /GEN=unc-44
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 03      4grp_highest_8_8 > 40      4grp_high_8_8 > 42      6grp_highest_nonorm > 02      6grp_total > 15      4grp_total > 53      6grp_highest_sub > De      6grp_cgc > 23      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3560
1 2 3 4 range
A 4589.3
(3)
P 		3869.2
(1.6)
P 		3230.6
(0.4)
P 		1510.1
(-3)
P 		3079
B 4228.9
(3)
P 		3829.6
(2.1)
P 		2961.8
(0.3)
P 		1421.2
(-3)
P 		2808
C 4763.8
(3)
P 		3335.7
(0.6)
P 		2693.5
(-0.5)
P 		1203.4
(-3)
P 		3560
avr 4527.3
(3) 		3678.2
(1.4) 		2962
(0) 		1378.2
(-3) 		3149

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2657
1 2 3 4 5 6 range
A 3655.3
(2.2)
P 		4014.7
(3)
P 		2351.2
(-0.8)
P 		2304
(-0.9)
P 		1404.4
(-2.9)
P 		1358.1
(-3)
P 		2657
B 3789.7
(3)
P 		2485.4
(-0.3)
P 		1860.1
(-1.9)
P 		1944.3
(-1.7)
P 		1431.6
(-3)
P 		1668.4
(-2.4)
P 		2358
C 3686.6
(3)
P 		3269.3
(1.9)
P 		2954.9
(1)
P 		1462.4
(-3)
P 		2218.8
(-1)
P 		1724
(-2.3)
P 		2224
avr 3710.5
(3) 		3256.5
(1.7) 		2388.7
(-0.7) 		1903.6
(-2.1) 		1684.9
(-2.7) 		1583.5
(-3) 		2127
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1468
1 2 3 4 range
A 1671
(3)
P 		839.9
(-0.4)
P 		844.5
(-0.4)
P 		221
(-3)
P 		1450
B 1348.6
(3)
P 		945.8
(0.7)
P 		686.3
(-0.8)
P 		302.9
(-3)
P 		1046
C 1577
(3)
P 		959
(0.3)
P 		938.8
(0.2)
P 		202.9
(-3)
P 		1374
avr 1532.2
(3) 		914.9
(0.1) 		823.2
(-0.3) 		242.3
(-3) 		1290

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1134
1 2 3 4 5 6 range
A 673.8
(-1.1)
P 		1427.8
(3)
P 		512
(-2)
P 		584.3
(-1.6)
P 		423.8
(-2.5)
P 		330.6
(-3)
P 		1097
B 1318.6
(3)
P 		827.3
(-0.4)
P 		451.7
(-3)
P 		515
(-2.6)
P 		581.6
(-2.1)
P 		622.1
(-1.8)
P 		867
C 1366.5
(3)
P 		997.6
(0.9)
P 		752.1
(-0.4)
P 		294.1
(-3)
P 		718
(-0.6)
P 		577.1
(-1.4)
P 		1072
avr 1119.6
(3) 		1084.2
(2.7) 		571.9
(-2) 		464.5
(-3) 		574.5
(-2) 		509.9
(-2.6) 		655
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171738_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24885
Sequence Type Exemplar sequence
Representative Public ID 790603 NCBI
Target Description g790603 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=B0350.2C /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=B0350.2C /WP=CE06704 /CHR=4 /FEA=Genomic Cluster /GEN=unc-44
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026097(9), NM_068497(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026097 NCBI Caenorhabditis elegans UNCoordinated family member (unc-44) (unc-44) mRNA, complete cds. 9/11 None
NM_068497 NCBI Caenorhabditis elegans UNCoordinated family member (unc-44) (unc-44) mRNA, complete cds. 9/11 None
B0350.2c ENSEMBL cdna:known chromosome:CEL140:IV:5975560:5987438:1 gene:B0350.2 9/11 A 
B0350.2f ENSEMBL cdna:known chromosome:CEL140:IV:5975560:6004843:1 gene:B0350.2 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026095 5/11 Cross Hyb Matching Probes None
NM_171907 7/11 Cross Hyb Matching Probes None
NM_001026098 2/11 Cross Hyb Matching Probes None
NM_001026096 6/11 Cross Hyb Matching Probes None
NM_068500 6/11 Cross Hyb Matching Probes None
SNAP00000023739 6/11 Cross Hyb Matching Probes None
SNAP00000023740 3/11 Cross Hyb Matching Probes None
GENEFINDER00000023990 6/11 Cross Hyb Matching Probes None
GENEFINDER00000023991 3/11 Cross Hyb Matching Probes None
B0350.2g.2 2/11 Cross Hyb Matching Probes None
B0350.2g.1 2/11 Cross Hyb Matching Probes None
B0350.2a 5/11 Cross Hyb Matching Probes None
B0350.2e 7/11 Cross Hyb Matching Probes None
B0350.2d.1 6/11 Cross Hyb Matching Probes None
B0350.2b.2 6/11 Cross Hyb Matching Probes None
B0350.2b.1 6/11 Cross Hyb Matching Probes None
B0350.2d.2 6/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177366 7 2 NM_001026095 175561_s_at (11), 176663_s_at (11)
NM_001026096 172153_x_at (11), 173125_s_at (11)
NM_001026097 171738_x_at (9), 172123_x_at (11), 172153_x_at (11), 173125_s_at (11), 174033_at (11), 181045_at (11)
NM_068497 171738_x_at (9), 172123_x_at (11), 172153_x_at (11), 173125_s_at (11)
NM_068500 172153_x_at (11), 173125_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5975566-5987255(+) 100.0 100.0
Public Domain and Genome References
Ensembl B0350.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA93447 Uncoordinated protein 44, isoform f [Caenorhabditis elegans] ref|NP_001021268.1| UNCoordinated family member (unc-44) [Caenorhabditis elegans] 0.0
blast AAB41827 AO13 ankyrin [Caenorhabditis elegans] 0.0
blast AAA93444 Uncoordinated protein 44, isoform c [Caenorhabditis elegans] ref|NP_500898.1| UNCoordinated family member (unc-44) [Caenorhabditis elegans] gb|AAB41828.1| AO66 ankyrin [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.4.5.MarR-like transcriptional regulators All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; MarR-like transcriptional regulators 6.19999980926514
Pfam IPR000488 EMBL-EBI Death domain 1.0E-20
Pfam IPR002110 EMBL-EBI Ankyrin 1.7
Pfam IPR002110 EMBL-EBI Ankyrin 4.4E-8
Pfam IPR002110 EMBL-EBI Ankyrin 1.5E-9
Pfam IPR002110 EMBL-EBI Ankyrin 4.7E-10
Pfam IPR002110 EMBL-EBI Ankyrin 5.2E-4
Pfam IPR002110 EMBL-EBI Ankyrin 0.048
Pfam IPR002110 EMBL-EBI Ankyrin 3.5E-11
Pfam IPR002110 EMBL-EBI Ankyrin 2.6E-7
Pfam IPR002110 EMBL-EBI Ankyrin 4.8E-9
Pfam IPR002110 EMBL-EBI Ankyrin 6.9E-6
Pfam IPR002110 EMBL-EBI Ankyrin 2.1E-9
Pfam IPR002110 EMBL-EBI Ankyrin 5.2E-10
Pfam IPR002110 EMBL-EBI Ankyrin 3.3E-10
Pfam IPR002110 EMBL-EBI Ankyrin 8.0E-11
Pfam IPR002110 EMBL-EBI Ankyrin 7.5E-10
Pfam IPR002110 EMBL-EBI Ankyrin 1.6E-7
Pfam IPR002110 EMBL-EBI Ankyrin 4.2E-11
Pfam IPR002110 EMBL-EBI Ankyrin 6.8E-7
Pfam IPR002110 EMBL-EBI Ankyrin 7.4E-11
Pfam IPR002110 EMBL-EBI Ankyrin 9.3E-8
Pfam IPR002110 EMBL-EBI Ankyrin 4.2E-7
Pfam IPR002110 EMBL-EBI Ankyrin 3.4E-10
Pfam IPR002110 EMBL-EBI Ankyrin 1.4E-9
Pfam IPR002110 EMBL-EBI Ankyrin 0.83
Pfam IPR000906 EMBL-EBI ZU5 domain 4.8E-62
Pfam IPR000488 EMBL-EBI Death domain 1.0E-20
Pfam IPR000906 EMBL-EBI ZU5 domain 1.4E-61
Sequence
Target Sequence 
>C. ELEGANS:171738_X_AT
gaagccccagtcgctgaaatgcgtaccgttgttcgaacggaacgacatgttcatgacagt
gaagatggaccagttgtagaggaaagaactattacaacaacatacgaagatgacgtggca
gtcaacgagaacattgttgaccgcacggttccattgaacgaggatgaacagcaaaagtgg
gaagagctgaaccgtttggctgatgaatcctcaccatccccagctcaacgctcaacaatt
gtagctgagagcacctccgagcaagttccagaagacgtcgagcaaagcgtagagtcggaa
agccatcgtgaagatgatggaacaattgtcacgacgacagtaaccactagtcacatcagc
ggatctccatcgggatcacctacaagacgatcagtggagcccgaagagcatcgtcatagt
caacatgaagatcacgaaggatctggcgctgagcagcactctggccaagactctggcacg
acacaaaagaaggaaactgcagaggaaggattcaccaacgaagatggatcagttgtggtt
tcgaagaaaatgacaagagttgtcactaccactcgtaccactttgccaggagaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCCCCAGTCGCTGAAATGCGTA 63 343 4992 Antisense
TTGACCGCACGGTTCCATTGAACGA 145 697 5128 Antisense
ACCGTTTGGCTGATGAATCCTCACC 202 89 5182 Antisense
CACCTCCGAGCAAGTTCCAGAAGAC 434 201 5243 Antisense
AACCACTAGTCACATCAGCGGATCT 430 147 5333 Antisense
TCTCCATCGGGATCACCTACAAGAC 607 607 5355 Antisense
GTGGAGCCCGAAGAGCATCGTCATA 17 491 5385 Antisense
AAGGATCTGGCGCTGAGCAGCACTC 166 161 5428 Antisense
ACTCTGGCCAAGACTCTGGCACGAC 670 99 5449 Antisense
CAAGAGTTGTCACTACCACTCGTAC 311 183 5545 Antisense
ACTCGTACCACTTTGCCAGGAGAAG 197 97 5562 Antisense
Sequence Source GenBank