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[171737_x_at] Drosphila REF (2)P like

Description C51771_rc /REP_DB=TREMBL Accession /GB=C51771 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk214e5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 38      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 37      6grp_total > 48      4grp_total > 03      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12043
1 2 3 4 range
A 4621.2
(-1.8)
P 		3151.9
(-2.9)
P 		3014.9
(-3)
P 		10950.8
(3)
P 		7936
B 4751.7
(-2)
P 		3191.3
(-2.8)
P 		2762.1
(-3)
P 		14794
(3)
P 		12032
C 4830.7
(-1.8)
P 		2996.9
(-2.9)
P 		2751.3
(-3)
P 		13551
(3)
P 		10800
avr 4734.5
(-1.9) 		3113.4
(-2.8) 		2842.8
(-3) 		13098.6
(3) 		10256

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3497
1 2 3 4 5 6 range
A 6755.1
(3)
P 		4546.9
(-0.8)
P 		3258.1
(-3)
P 		4147.3
(-1.5)
P 		4424.3
(-1)
P 		5994.9
(1.7)
P 		3497
B 6101.8
(3)
P 		4745.9
(-0.6)
P 		4297.1
(-1.8)
P 		4650.7
(-0.8)
P 		3824
(-3)
P 		5323.1
(0.9)
P 		2278
C 5746.2
(3)
P 		4582.9
(-1.8)
P 		4280.1
(-3)
P 		4445.9
(-2.3)
P 		4347.7
(-2.7)
P 		5589.2
(2.4)
P 		1466
avr 6201
(3) 		4625.2
(-1.2) 		3945.1
(-3) 		4414.6
(-1.8) 		4198.7
(-2.3) 		5635.7
(1.5) 		2256
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2513
1 2 3 4 range
A 1682.6
(3)
P 		684.2
(-3)
P 		788.1
(-2.4)
P 		1603
(2.5)
P 		998
B 1515.3
(-0.9)
P 		788.2
(-2.6)
P 		640
(-3)
P 		3152.6
(3)
P 		2513
C 1599.1
(0.1)
P 		861.6
(-3)
P 		958.9
(-2.6)
P 		2284.9
(3)
P 		1423
avr 1599
(0.1) 		778
(-3) 		795.7
(-2.9) 		2346.8
(3) 		1569

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1420
1 2 3 4 5 6 range
A 1245.2
(0.5)
P 		1617.1
(3)
P 		709.5
(-3)
P 		1051.8
(-0.7)
P 		1335.1
(1.1)
P 		1459.6
(2)
P 		908
B 2123.1
(3)
P 		1579.7
(-0)
P 		1043.5
(-3)
P 		1231.8
(-2)
P 		1553.6
(-0.2)
P 		1985
(2.2)
P 		1080
C 2129.9
(3)
P 		1398.4
(-0.6)
P 		1089.4
(-2.1)
P 		894.1
(-3)
P 		1406.8
(-0.5)
P 		1871
(1.7)
P 		1236
avr 1832.7
(3) 		1531.7
(1) 		947.5
(-3) 		1059.2
(-2.2) 		1431.8
(0.3) 		1771.9
(2.6) 		885
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171737_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21368
Sequence Type Exemplar sequence
Representative Public ID C51771 NCBI
Target Description C51771_rc /REP_DB=TREMBL Accession /GB=C51771 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk214e5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069879(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069879 NCBI Caenorhabditis elegans T12G3.1 (T12G3.1) mRNA, complete cds. 11/11 A 
T12G3.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:12034223:12037022:1 gene:T12G3.1 11/11 None
T12G3.1.3 ENSEMBL cdna:known chromosome:CEL140:IV:12034251:12036868:1 gene:T12G3.1 11/11 None
T12G3.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:12034253:12037022:1 gene:T12G3.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042347 7/11 Cross Hyb Matching Probes None
GENEFINDER00000042353 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12036463-12036802(+) 100.0 100.0
Public Domain and Genome References
Gene Title Drosphila REF (2)P like
Ensembl T12G3.1
Entrez Gene 178139 Entrez gene
SwissProt Q22436 EMBL-EBI
WormBase CE37554 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92982 Hypothetical protein T12G3.1 [Caenorhabditis elegans] ref|NP_502280.2| T12G3.1 [Caenorhabditis elegans] 0.0
blast CAE62166 Hypothetical protein CBG06213 [Caenorhabditis briggsae] 1.0E-155
blast CAE61858 Hypothetical protein CBG05836 [Caenorhabditis briggsae] 6.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR000433 EMBL-EBI Zn-finger, ZZ type 1.1E-10
Sequence
Target Sequence 
>C. ELEGANS:171737_X_AT
gaagctcaagaagaagctcgcccagagccagagcaatctctaccaccatttaatgaggag
acattcgatcgtctccttgagatgggattctcctacaacgtcactgttgctgcaatcaga
gcaaatggatcgaatctcgagatgtgtcttcaggcgcttcttcactaatttgtacatcct
gtatcgtgtcgcccaaccaactctctcctagatactattagtcattttcatcattccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCTCAAGAAGAAGCTCGCCCAG 77 343 22 Antisense
TCGCCCAGAGCCAGAGCAATCTCTA 459 599 39 Antisense
AGCAATCTCTACCACCATTTAATGA 140 77 53 Antisense
AGACATTCGATCGTCTCCTTGAGAT 345 71 80 Antisense
AGATGGGATTCTCCTACAACGTCAC 69 69 101 Antisense
ACAACGTCACTGTTGCTGCAATCAG 462 113 116 Antisense
ATCTCGAGATGTGTCTTCAGGCGCT 494 33 155 Antisense
GCTTCTTCACTAATTTGTACATCCT 509 305 177 Antisense
TTTGTACATCCTGTATCGTGTCGCC 25 667 190 Antisense
AACCAACTCTCTCCTAGATACTATT 662 147 216 Antisense
CTATTAGTCATTTTCATCATTCCAA 365 223 236 Antisense
Sequence Source Affymetrix Proprietary Database