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[171733_x_at]

Description AV178000_rc /REP_DB=TREMBL Accession /GB=AV178000 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk536f4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 65      6grp_high1_10_10 > 56      4grp_highest_8_8 > 55      4grp_high_8_8 > 19      6grp_highest_nonorm > 82      6grp_total > 56      4grp_total > 21      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 453
1 2 3 4 range
A 344.9
(1.7)
P 		156.5
(-2.5)
P 		132.9
(-3)
P 		401.8
(3)
P 		269
B 416.7
(3)
P 		305.6
(0.7)
P 		127.3
(-3)
P 		377.5
(2.2)
P 		289
C 436.7
(1.2)
P 		255.8
(-1.2)
P 		118.6
(-3)
P 		571.7
(3)
P 		453
avr 399.4
(2.1) 		239.3
(-0.9) 		126.3
(-3) 		450.3
(3) 		324

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 465
1 2 3 4 5 6 range
A 385.4
(0.6)
P 		445.4
(3)
P 		338.6
(-1.3)
P 		297.5
(-3)
P 		376.3
(0.2)
P 		438.6
(2.7)
P 		148
B 329.6
(-1)
P 		311.6
(-1.2)
P 		352.2
(-0.7)
P 		402.1
(0.1)
P 		187.2
(-3)
P 		608.7
(3)
P 		422
C 284.6
(-1.2)
P 		479
(1.3)
P 		351.1
(-0.3)
P 		450.8
(1)
P 		143.6
(-3)
P 		608.8
(3)
P 		465
avr 333.2
(-1.2) 		412
(0.3) 		347.3
(-0.9) 		383.5
(-0.2) 		235.7
(-3) 		552
(3) 		316
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 125.6
(3)
P 		34
(-3)
P 		34.8
(-2.9)
P 		58.8
(-1.4)
P 		92
B 132.9
(3)
P 		75.5
(-0.3)
P 		29.5
(-3)
P 		80.4
(-0)
P 		103
C 144.6
(3)
P 		73.5
(-1.1)
P 		41.3
(-3)
P 		96.4
(0.2)
P 		103
avr 134.4
(3) 		61
(-1.4) 		35.2
(-3) 		78.5
(-0.4) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 181
1 2 3 4 5 6 range
A 71.1
(-3)
P 		158.4
(3)
P 		73.7
(-2.8)
P 		75.4
(-2.7)
P 		113.6
(-0.1)
P 		106.8
(-0.5)
P 		87
B 114.7
(-1.5)
P 		103.7
(-1.9)
P 		85.5
(-2.6)
P 		106.5
(-1.8)
P 		76.1
(-3)
P 		227
(3)
P 		151
C 105.5
(-0.7)
P 		146.2
(0.8)
P 		89.4
(-1.4)
P 		90.6
(-1.3)
P 		46.5
(-3)
P 		203.8
(3)
P 		157
avr 97.1
(-1.9) 		136.1
(0.4) 		82.9
(-2.7) 		90.8
(-2.3) 		78.7
(-3) 		179.2
(3) 		101
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171733_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21118
Sequence Type Exemplar sequence
Representative Public ID AV178000 NCBI
Target Description AV178000_rc /REP_DB=TREMBL Accession /GB=AV178000 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk536f4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066025(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066025 NCBI Caenorhabditis elegans F23F12.9a (F23F12.9) mRNA, complete cds. 10/11 A 
F23F12.9a ENSEMBL cdna:known chromosome:CEL140:III:6478895:6481161:1 gene:F23F12.9 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000039915 4/11 Cross Hyb Matching Probes None
SNAP00000039900 4/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175924 2 1 NM_066025 171733_x_at (10), 187591_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6480684-6481098(+) 100.0 100.0
Public Domain and Genome References
Ensembl F23F12.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498426 F23F12.9a [Caenorhabditis elegans] gb|AAA20611.1| Hypothetical protein F23F12.9a [Caenorhabditis elegans] sp|P46505|YLX9_CAEEL Hypothetical protein F23F12.9 in chromosome III 5.0E-91
blast NP_871665 F23F12.9b [Caenorhabditis elegans] gb|AAN63409.1| Hypothetical protein F23F12.9b [Caenorhabditis elegans] 2.0E-26
blast CAE64411 Hypothetical protein CBG09103 [Caenorhabditis briggsae] 8.0E-12
Sequence
Target Sequence 
>C. ELEGANS:171733_X_AT
cgacgagaagcataccgccgagagaacgaaatgctgaaaatggtgaacaacaaatttgcg
gactcaaaattcgaacctccgcaaccacttcgtgatatgaccaactgcaacctgccatac
aaatacgaacttctctcttaaatttatttcattccctctattgagaaatttcatgtatat
ttttgtgtcccaattcccagttaagtaggtatcggttttatggtcttctgagagttgtgg
ctattcttatttttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGACGAGAAGCATACCGCCGAGAGA 668 249 17 Antisense
GACTCAAAATTCGAACCTCCGCAAC 503 371 77 Antisense
CCTCCGCAACCACTTCGTGATATGA 475 267 92 Antisense
TGATATGACCAACTGCAACCTGCCA 664 563 109 Antisense
GCAACCTGCCATACAAATACGAACT 213 321 123 Antisense
TACGAACTTCTCTCTTAAATTTATT 272 411 140 Antisense
TAAATTTATTTCATTCCCTCTATTG 557 641 155 Antisense
ATATTTTTGTGTCCCAATTCCCAGT 559 17 193 Antisense
ATCGGTTTTATGGTCTTCTGAGAGT 349 35 227 Antisense
GGTCTTCTGAGAGTTGTGGCTATTC 498 503 238 Antisense
GAGTTGTGGCTATTCTTATTTTTGT 623 397 248 Antisense
Sequence Source Affymetrix Proprietary Database