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[171730_x_at]

Description g4680194-REP_DB=GenBank Identifier /5_PRIME_EXT_ID=g4680194 /5_PRIME_EXT_DB=GenBank Identifier /CHR=X /FEA=Genomic Cluster /GEN=vap-1 /DEF=venom allergen-like protein
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 30      6grp_highest_nonorm > 43      6grp_total > 42      4grp_total > 61      6grp_cgc > 81      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2116
1 2 3 4 range
A 2125.6
(3)
P 		1532.8
(1.2)
P 		1342.5
(0.7)
P 		104
(-3)
A 		2022
B 2082
(3)
P 		1713
(1.9)
P 		1938.6
(2.6)
P 		80.4
(-3)
A 		2002
C 2173.1
(3)
P 		1401.6
(0.8)
P 		1415.1
(0.9)
P 		57.3
(-3)
A 		2116
avr 2126.9
(3) 		1549.1
(1.3) 		1565.4
(1.4) 		80.6
(-3) 		2046

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1192
1 2 3 4 5 6 range
A 946.3
(-0.5)
P 		1441.6
(2.1)
P 		1612.8
(3)
P 		995.8
(-0.3)
P 		480.7
(-3)
P 		555.8
(-2.6)
P 		1132
B 995.2
(-0.1)
P 		1044.4
(0.2)
P 		1524.8
(3)
P 		1085.9
(0.4)
P 		510.3
(-3)
P 		515.2
(-3)
P 		1015
C 1122.5
(-0)
P 		842.5
(-1.6)
P 		1672.7
(3)
P 		795.8
(-1.9)
P 		743.7
(-2.1)
P 		588.2
(-3)
P 		1085
avr 1021.3
(-0.3) 		1109.5
(0.2) 		1603.4
(3) 		959.2
(-0.7) 		578.2
(-2.9) 		553.1
(-3) 		1050
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 764
1 2 3 4 range
A 773.9
(3)
P 		332.7
(-0.5)
P 		351
(-0.3)
P 		15.2
(-3)
A 		759
B 663.9
(3)
P 		423.1
(0.8)
P 		449.2
(1)
P 		17.1
(-3)
A 		647
C 719.3
(3)
P 		403
(0.3)
P 		493.2
(1.1)
P 		9.7
(-3)
A 		710
avr 719
(3) 		386.3
(0.2) 		431.1
(0.5) 		14
(-3) 		705

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 377
1 2 3 4 5 6 range
A 174.4
(-2.4)
P 		512.7
(3)
P 		351.2
(0.4)
P 		252.5
(-1.1)
P 		145.1
(-2.8)
P 		135.3
(-3)
P 		377
B 346.3
(2.2)
P 		347.6
(2.2)
P 		370.3
(3)
P 		287.6
(0.2)
P 		207.3
(-2.5)
P 		192.1
(-3)
P 		178
C 416.1
(2.8)
P 		257.1
(-0.8)
P 		425.7
(3)
P 		160
(-3)
P 		240.7
(-1.2)
P 		196.9
(-2.2)
P 		266
avr 312.3
(1) 		372.5
(2.7) 		382.4
(3) 		233.4
(-1.3) 		197.7
(-2.3) 		174.8
(-3) 		208
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171730_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26142
Sequence Type Exemplar sequence
Representative Public ID 4680194 NCBI
Target Description g4680194-REP_DB=GenBank Identifier /5_PRIME_EXT_ID=g4680194 /5_PRIME_EXT_DB=GenBank Identifier /CHR=X /FEA=Genomic Cluster /GEN=vap-1 /DEF=venom allergen-like protein
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029382(10), NM_171818(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029382 NCBI Caenorhabditis elegans Venom-Allergen-like Protein family member (vap-1) (vap-1) mRNA, complete cds. 10/11 None
NM_171818 NCBI Caenorhabditis elegans Venom-Allergen-like Protein family member (vap-1) (vap-1) mRNA, complete cds. 10/11 A 
GENEFINDER00000033136 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17393075:17396370:-1 10/11 None
SNAP00000033125 ENSEMBL cdna:SNAP chromosome:CEL140:X:17393903:17396370:-1 10/11 None
F11C7.3b ENSEMBL cdna:known chromosome:CEL140:X:17393701:17396370:-1 gene:F11C7.3 10/11 A 
F11C7.3a ENSEMBL cdna:known chromosome:CEL140:X:17393903:17396370:-1 gene:F11C7.3 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17393852-17396370(-) 100.0 100.0
Public Domain and Genome References
Ensembl F11C7.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM54195 Venom-allergen-like protein protein 1, isoform b [Caenorhabditis elegans] ref|NP_001024553.1| Venom-Allergen-like Protein family member (vap-1) [Caenorhabditis elegans] 0.0
blast AAC69015 Venom-allergen-like protein protein 1, isoform a [Caenorhabditis elegans] ref|NP_741951.1| Venom-Allergen-like Protein family member (vap-1) [Caenorhabditis elegans] gb|AAD27559.1| venom allergen-like protein [Caenorhabditis elegans] 0.0
blast CAE69675 Hypothetical protein CBG15925 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 2.8E-28
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 1.4E-50
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 3.6E-48
Sequence
Target Sequence 
>C. ELEGANS:171730_X_AT
ggcgcgtcaaaacttcttggacacccataacaaattgcgtacaagccttgccaagggact
tgaagctgatggaattgccgctggagcatttgcaccaatggccaagcaaatgccaaaact
ggtgaaatacagctgcacagttgaagcaaacgccagaacatgggcaaaaggatgccttta
ccagcattcaacaagcgcacagagaccaggactcggtgaaaatctttatatgatcagcat
taacaacatgcctaaaattcaaaccgcggaggagtcctcaaaggcttggtggtccgagtt
gaaagacttcggagtcggttctgacaacattctgacccaagcagtttttgatcgtggcgt
tggacattacacacaaatggcatgggaaggaactactgaaattggatgttttgtggagaa
ttgtccaacattcacttattccgtatgccaatatggtccagccggaaactacatgaacca
actaatctataccaagggctcaccatgcacagctgacgccgattgcccaggaacccagac
atgcagtgtcgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGCGTCAAAACTTCTTGGACACC 112 543 715 Antisense
GAATTGCCGCTGGAGCATTTGCACC 57 325 786 Antisense
GCCTTTACCAGCATTCAACAAGCGC 461 281 888 Antisense
AAGCGCACAGAGACCAGGACTCGGT 403 149 907 Antisense
GAGTCCTCAAAGGCTTGGTGGTCCG 487 399 986 Antisense
AGACTTCGGAGTCGGTTCTGACAAC 389 71 1018 Antisense
TTCTGACAACATTCTGACCCAAGCA 699 693 1033 Antisense
ATTGTCCAACATTCACTTATTCCGT 185 5 1134 Antisense
GTATGCCAATATGGTCCAGCCGGAA 29 455 1157 Antisense
TCTATACCAAGGGCTCACCATGCAC 164 615 1200 Antisense
GGAACCCAGACATGCAGTGTCGCTG 201 531 1244 Antisense
Sequence Source GenBank