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Cluster Members Consensus/Exemplar Group Members |
GeneChip Array Information |
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191377_s_at |
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C. elegans Genome Array |
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Nematode |
Probe Design Information |
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affy.Ce.16089
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Exemplar sequence
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C24A8.1 NCBI
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C24A8.1 /REP_DB=WormBase Gene ID /WP=CE08337 /TR=P91096 /GB=AAK39179.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=G-protein coupled receptor
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This cluster is supported by a Sanger Annotation. |
Annotation Method Description |
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This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s). |
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This is a grade A annotation. |
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NM_076338(11), NM_076340(11) |
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NM_076338 NCBI |
Caenorhabditis elegans C24A8.1 (C24A8.1) mRNA, complete cds. |
11/11 |
A |
NM_076340 NCBI |
Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-306) (tag-306) mRNA, complete cds. |
11/11 |
A |
GENEFINDER00000036350 ENSEMBL |
cdna:GeneFinder chromosome:CEL140:X:4320837:4327305:1 |
11/11 |
None |
C24A8.1 ENSEMBL |
cdna:known chromosome:CEL140:X:4320837:4326323:1 gene:C24A8.1 |
11/11 |
A |
C24A8.4a ENSEMBL |
cdna:known chromosome:CEL140:X:4330052:4336008:-1 gene:C24A8.4 |
11/11 |
A | |
SNAP00000036343 |
3/11 |
Cross Hyb Matching Probes |
None | |
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Genomic Alignment of Consensus/Exemplar Sequence |
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Wormbase March 2004 |
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chrX:4320837-4326324(+) |
100.0 |
100.0 |
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Public Domain and Genome References |
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G-protein coupled receptor
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C24A8.1 C24A8.4
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180706 Entrez gene
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P91096 EMBL-EBI
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CE08337 Wormbase
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Functional Annotations |
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7186 |
G-protein coupled receptor protein signaling pathway |
inferred from electronic annotation |
QuickGO AmiGO |
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16021 |
integral to membrane |
inferred from electronic annotation |
QuickGO AmiGO |
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1584 |
rhodopsin-like receptor activity |
inferred from electronic annotation |
QuickGO AmiGO | |
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blast |
AAK39179 |
Hypothetical protein C24A8.1 [Caenorhabditis elegans] ref|NP_508739.1| C24A8.1 [Caenorhabditis elegans] |
0.0 |
blast |
AAK39183 |
Temporarily assigned gene name protein 306, isoform a [Caenorhabditis elegans] ref|NP_508741.2| Temporarily Assigned Gene name family member (tag-306) [Caenorhabditis elegans] |
0.0 |
blast |
AAK39182 |
Temporarily assigned gene name protein 306, isoform b [Caenorhabditis elegans] ref|NP_508742.1| Temporarily Assigned Gene name family member (tag-306) [Caenorhabditis elegans] |
0.0 |
blast |
AAK68327 |
Hypothetical protein F14H12.4b [Caenorhabditis elegans] ref|NP_001024575.1| F14H12.4b [Caenorhabditis elegans] |
0.0 |
blast |
CAE68558 |
Hypothetical protein CBG14393 [Caenorhabditis briggsae] |
0.0 |
blast |
AAK39179 |
Hypothetical protein C24A8.1 [Caenorhabditis elegans] ref|NP_508739.1| C24A8.1 [Caenorhabditis elegans] |
1.0E-139 | |
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ec |
A2S7_HUMAN |
(Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) |
8.0E-65 |
ec |
A2S7_HUMAN |
(Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) |
4.0E-65 |
hanks |
2.1.17 |
CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; TWITCH |
2.0E-71 |
hanks |
2.1.17 |
CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; TWITCH |
1.0E-71 | |
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Pfam |
IPR000276 EMBL-EBI |
Rhodopsin-like GPCR superfamily |
1.5E-61 |
Pfam |
IPR000719 EMBL-EBI |
Protein kinase |
8.5E-93 |
Pfam |
IPR000276 EMBL-EBI |
Rhodopsin-like GPCR superfamily |
2.2E-19 |
Pfam |
IPR000276 EMBL-EBI |
Rhodopsin-like GPCR superfamily |
6.1E-17 |
Pfam |
IPR000276 EMBL-EBI |
Rhodopsin-like GPCR superfamily |
5.0E-63 |
NP_508739.1 |
7 |
26-48,63-85,106-128,155-174,277-299,314-333,340-362 |
NP_508741.2 |
2 |
494-516,531-553 |
C24A8.1 |
7 |
26-48,63-85,106-128,155-174,277-299,314-333,340-362 |
C24A8.4a |
2 |
447-469,484-506 |
GENEFINDER00000036350 |
6 |
26-48,63-85,106-128,155-174,485-507,522-544 | |
Sequence |
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>C. ELEGANS:191377_S_AT
gggcgctggacctgttagcaaaactgaaatccaagcagggaatggcgattcgtcgagaga
ctcgtgcaaccaagttggttgcaactgtaatggtggtttttctcgtctgctggcttccgt
ttttcacattgaacatgatcaaaatttacaaattgatattcaacgtttggtcagcggacc
tcgaaatttggttccattggtttaccgcactggggtatttgaattcgtcactcaactttt
tcatttactcaacaatcaatccagtaagcatttttatatcaaatttgatatcgaaaaaga
ttatatttttaatttttcaagttcaatttgcgttgtataaaacattaattcatggaattg
agacaagaaattccgtcattcattccgccgcttacttggcttccgtcgatcttctcgacg
tcagagagaaaaatcgtggatgttaccgccacgagatagcagc
BLASTn GenBank NR |
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GGGCGCTGGACCTGTTAGCAAAACT |
450 |
489 |
767 |
Antisense |
GAATGGCGATTCGTCGAGAGACTCG |
260 |
333 |
806 |
Antisense |
GAGAGACTCGTGCAACCAAGTTGGT |
316 |
381 |
821 |
Antisense |
CTGTAATGGTGGTTTTTCTCGTCTG |
439 |
219 |
851 |
Antisense |
TGGCTTCCGTTTTTCACATTGAACA |
606 |
543 |
877 |
Antisense |
TATTCAACGTTTGGTCAGCGGACCT |
627 |
661 |
923 |
Antisense |
AGCGGACCTCGAAATTTGGTTCCAT |
178 |
81 |
939 |
Antisense |
TTGGTTCCATTGGTTTACCGCACTG |
134 |
705 |
954 |
Antisense |
GCACTGGGGTATTTGAATTCGTCAC |
120 |
313 |
973 |
Antisense |
CTTCCGTCGATCTTCTCGACGTCAG |
30 |
219 |
1166 |
Antisense |
GATGTTACCGCCACGAGATAGCAGC |
100 |
409 |
1205 |
Antisense | |
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Affymetrix Proprietary Database |