|
|
Cluster Members Consensus/Exemplar Group Members |
GeneChip Array Information |
|
172380_x_at |
|
C. elegans Genome Array |
|
Nematode |
Probe Design Information |
|
affy.Ce.265
|
|
Exemplar sequence
|
|
F47B3.2 NCBI
|
|
F47B3.2 /REP_DB=WormBase Gene ID /WP=CE10618 /TR=Q9TY27 /GB=AAB52357.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
|
Annotation Method Description |
|
This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s). |
|
This is a grade A annotation. |
|
NM_058875(11), NM_058876(11) |
|
|
|
|
|
NM_058875 NCBI |
Caenorhabditis elegans F47B3.7 (F47B3.7) mRNA, complete cds. |
11/11 |
A |
NM_058876 NCBI |
Caenorhabditis elegans F47B3.2 (F47B3.2) mRNA, complete cds. |
11/11 |
A |
GENEFINDER00000030473 ENSEMBL |
cdna:GeneFinder chromosome:CEL140:I:3963117:3969943:-1 |
11/11 |
None |
SNAP00000030468 ENSEMBL |
cdna:SNAP chromosome:CEL140:I:3968166:3969943:-1 |
11/11 |
None |
SNAP00000030469 ENSEMBL |
cdna:SNAP chromosome:CEL140:I:3969797:3971279:1 |
11/11 |
None |
F47B3.7 ENSEMBL |
cdna:known chromosome:CEL140:I:3968166:3970012:-1 gene:F47B3.7 |
11/11 |
A |
F47B3.2 ENSEMBL |
cdna:known chromosome:CEL140:I:3970376:3971304:1 gene:F47B3.2 |
11/11 |
A | |
There are no noteworthy cross hybridizing mRNAs found for this probe set. | |
Genomic Alignment of Consensus/Exemplar Sequence |
|
Wormbase March 2004 |
|
|
|
|
|
chrI:3970375-3971279(+) |
100.0 |
100.0 |
|
chrI:3968165-3969069(-) |
100.0 |
100.0 |
| |
Public Domain and Genome References |
|
|
|
F47B3.7 F47B3.2
|
|
171983 Entrez gene 185885 Entrez gene
|
|
Q9TY27 EMBL-EBI O01556 EMBL-EBI
|
|
CE10618 Wormbase CE10628 Wormbase
|
Functional Annotations |
|
|
|
|
|
6470 |
protein amino acid dephosphorylation |
inferred from electronic annotation |
QuickGO AmiGO |
|
|
|
|
4721 |
phosphoprotein phosphatase activity |
inferred from electronic annotation |
QuickGO AmiGO |
4725 |
protein tyrosine phosphatase activity |
inferred from electronic annotation |
QuickGO AmiGO | |
|
|
|
|
|
blast |
AAB52362 |
Hypothetical protein F47B3.7 [Caenorhabditis elegans] ref|NP_491276.1| F47B3.7 [Caenorhabditis elegans] |
0.0 |
blast |
AAB52356 |
Hypothetical protein F47B3.1 [Caenorhabditis elegans] ref|NP_491278.1| F47B3.1 [Caenorhabditis elegans] |
0.0 |
blast |
AAB52361 |
Hypothetical protein F47B3.6 [Caenorhabditis elegans] ref|NP_491275.2| F47B3.6 [Caenorhabditis elegans] |
1.0E-175 |
blast |
AAB52362 |
Hypothetical protein F47B3.7 [Caenorhabditis elegans] ref|NP_491276.1| F47B3.7 [Caenorhabditis elegans] |
1.0E-107 |
blast |
AAB52356 |
Hypothetical protein F47B3.1 [Caenorhabditis elegans] ref|NP_491278.1| F47B3.1 [Caenorhabditis elegans] |
3.0E-92 | |
|
|
|
|
|
Pfam |
IPR000242 EMBL-EBI |
Tyrosine specific protein phosphatase |
1.3E-102 |
Pfam |
IPR000242 EMBL-EBI |
Tyrosine specific protein phosphatase |
6.2E-92 |
Pfam |
IPR004296 EMBL-EBI |
Protein of unknown function DUF236 |
3.6E-14 |
Pfam |
IPR000242 EMBL-EBI |
Tyrosine specific protein phosphatase |
2.8E-48 |
Pfam |
IPR000242 EMBL-EBI |
Tyrosine specific protein phosphatase |
3.5E-31 | |
Sequence |
|
>C. ELEGANS:172380_X_AT
cgatacgaatccggtcgtcgttcactgctctgctggagttggtcgttctggaactattgt
gggaatttctttgattatggataagatgattcagggaattaattgcaaagacatgaaaaa
gttagtcgaggaaatccgcaatcagcgtcactatgccattcagacggaggcgcaatacat
gtacattcaccgtgttctcctcgaatacttcttggaattgcacaaagagacgtacgaagg
attgttgctgacaaagaattacgaggaaaagtatgcaaagtggctggacgattataacac
ctacgcagaagccaacgatcg
BLASTn GenBank NR |
|
|
|
|
|
|
CGATACGAATCCGGTCGTCGTTCAC |
145 |
239 |
48 |
Antisense |
TTCACTGCTCTGCTGGAGTTGGTCG |
684 |
681 |
68 |
Antisense |
TCTGCTGGAGTTGGTCGTTCTGGAA |
460 |
609 |
76 |
Antisense |
GAGGAAATCCGCAATCAGCGTCACT |
370 |
405 |
175 |
Antisense |
ATCAGCGTCACTATGCCATTCAGAC |
637 |
27 |
188 |
Antisense |
GCCATTCAGACGGAGGCGCAATACA |
664 |
277 |
202 |
Antisense |
ACATGTACATTCACCGTGTTCTCCT |
526 |
105 |
224 |
Antisense |
GTGTTCTCCTCGAATACTTCTTGGA |
622 |
485 |
239 |
Antisense |
GACGTACGAAGGATTGTTGCTGACA |
9 |
379 |
276 |
Antisense |
GGCTGGACGATTATAACACCTACGC |
24 |
535 |
329 |
Antisense |
ACACCTACGCAGAAGCCAACGATCG |
4 |
111 |
344 |
Antisense | |
|
Affymetrix Proprietary Database |