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Cluster Members Consensus/Exemplar Group Members |
GeneChip Array Information |
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172142_x_at |
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C. elegans Genome Array |
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Nematode |
Probe Design Information |
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affy.Ce.6547
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Exemplar sequence
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R05D3.5 NCBI
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R05D3.5 /REP_DB=WormBase Gene ID /WP=CE25967 /GB=AAK21445.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
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Annotation Method Description |
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This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s). |
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This is a grade B annotation. |
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NM_066437, NM_069841, NM_066439 |
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SNAP00000039719 ENSEMBL |
cdna:SNAP chromosome:CEL140:III:8340841:8341658:1 |
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None |
NM_066439 NCBI |
Caenorhabditis elegans R05D3.5 (R05D3.5) mRNA, complete cds. |
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None |
F38H4.6 ENSEMBL |
cdna:known chromosome:CEL140:IV:11847005:11848115:-1 gene:F38H4.6 |
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A |
NM_069841 NCBI |
Caenorhabditis elegans F38H4.6 (F38H4.6) mRNA, complete cds. |
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A |
SNAP00000007678 ENSEMBL |
cdna:SNAP chromosome:CEL140:IV:11847005:11847727:-1 |
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None |
GENEFINDER00000007688 ENSEMBL |
cdna:GeneFinder chromosome:CEL140:IV:11847005:11847727:-1 |
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None |
NM_066437 NCBI |
Caenorhabditis elegans ZC262.1 (ZC262.1) mRNA, complete cds. |
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None |
ZC262.1 ENSEMBL |
cdna:known chromosome:CEL140:III:8340841:8341325:1 gene:ZC262.1 |
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None |
SNAP00000035973 ENSEMBL |
cdna:SNAP chromosome:CEL140:III:8349036:8349853:1 |
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None |
R05D3.5 ENSEMBL |
cdna:known chromosome:CEL140:III:8349036:8349520:1 gene:R05D3.5 |
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None |
SNAP00000039719 ENSEMBL |
cdna:SNAP chromosome:CEL140:III:8340841:8341658:1 |
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None |
NM_066439 NCBI |
Caenorhabditis elegans R05D3.5 (R05D3.5) mRNA, complete cds. |
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None |
NM_069841 NCBI |
Caenorhabditis elegans F38H4.6 (F38H4.6) mRNA, complete cds. |
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A |
F38H4.6 ENSEMBL |
cdna:known chromosome:CEL140:IV:11847005:11848115:-1 gene:F38H4.6 |
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A |
SNAP00000007678 ENSEMBL |
cdna:SNAP chromosome:CEL140:IV:11847005:11847727:-1 |
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None |
GENEFINDER00000007688 ENSEMBL |
cdna:GeneFinder chromosome:CEL140:IV:11847005:11847727:-1 |
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None |
NM_066437 NCBI |
Caenorhabditis elegans ZC262.1 (ZC262.1) mRNA, complete cds. |
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None |
ZC262.1 ENSEMBL |
cdna:known chromosome:CEL140:III:8340841:8341325:1 gene:ZC262.1 |
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None |
SNAP00000035973 ENSEMBL |
cdna:SNAP chromosome:CEL140:III:8349036:8349853:1 |
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None |
R05D3.5 ENSEMBL |
cdna:known chromosome:CEL140:III:8349036:8349520:1 gene:R05D3.5 |
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None | |
There are no noteworthy cross hybridizing mRNAs found for this probe set. | |
Genomic Alignment of Consensus/Exemplar Sequence |
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Wormbase March 2004 |
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chrIII:8349031-8349849(+) |
100.0 |
100.0 |
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chrIII:8340836-8341654(+) |
100.0 |
100.0 |
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Public Domain and Genome References |
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ZC262.1 R05D3.5 F38H4.6
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176177 Entrez gene 185481 Entrez gene 191129 Entrez gene
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Q20185 EMBL-EBI P34538 EMBL-EBI P34593 EMBL-EBI
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CE10068 Wormbase CE28272 Wormbase CE28272 Wormbase
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Functional Annotations |
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5198 |
structural molecule activity |
inferred from electronic annotation |
QuickGO AmiGO | |
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blast |
CAB01177 |
Hypothetical protein F38H4.6 [Caenorhabditis elegans] ref|NP_502242.1| F38H4.6 [Caenorhabditis elegans] |
1.0E-110 |
blast |
CAB01177 |
Hypothetical protein F38H4.6 [Caenorhabditis elegans] ref|NP_502242.1| F38H4.6 [Caenorhabditis elegans] |
2.0E-86 |
blast |
P34538 |
Hypothetical protein R05D3.5 in chromosome III |
2.0E-76 |
blast |
P34538 |
Hypothetical protein R05D3.5 in chromosome III |
3.0E-76 |
blast |
P34538 |
Hypothetical protein R05D3.5 in chromosome III |
6.0E-76 | |
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Pfam |
IPR000535 EMBL-EBI |
Major sperm protein (MSP) domain |
8.7E-26 |
Pfam |
IPR000535 EMBL-EBI |
Major sperm protein (MSP) domain |
1.9E-27 |
Pfam |
IPR000535 EMBL-EBI |
Major sperm protein (MSP) domain |
8.7E-26 | |
Sequence |
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>C. ELEGANS:172142_X_AT
atcaccggttgctgttggtatgacggttcttccaccaaatcaagaaaattttgttgatgc
tggatcaactacattgatgaataaacccggtgaaccgattttcaaattggccattaatct
gacaaaaaagcaagcggctaacaggcatgtaggcaggcgtaaatcaagaacgaactttaa
aaacacattttcaacagttgaattcaagtgcacagaagatcgaaaaccaatatcagtaaa
cttgaagttgcacaatccaacggctgtaactgtttcgtacaaagttcgttgcacgtctgc
agatatttttcgtgtccaacctccactgggatttgtaaagccgagtgaaacagtttcaat
tgtgatttggtatcagaatcaagacaagaaagatgcaatctcaaagaatcactatttcgc
tttttaccataccaacagcgatggaagaactgctcgtgaattatgggc
BLASTn GenBank NR |
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ATCACCGGTTGCTGTTGGTATGACG |
471 |
27 |
27 |
Antisense |
TATGACGGTTCTTCCACCAAATCAA |
477 |
655 |
45 |
Antisense |
GAACCGATTTTCAAATTGGCCATTA |
250 |
347 |
118 |
Antisense |
GCAAGCGGCTAACAGGCATGTAGGC |
117 |
313 |
156 |
Antisense |
GGCATGTAGGCAGGCGTAAATCAAG |
606 |
535 |
170 |
Antisense |
GCACAATCCAACGGCTGTAACTGTT |
93 |
317 |
276 |
Antisense |
GTACAAAGTTCGTTGCACGTCTGCA |
424 |
461 |
303 |
Antisense |
TGCAGATATTTTTCGTGTCCAACCT |
573 |
577 |
324 |
Antisense |
TGTCCAACCTCCACTGGGATTTGTA |
45 |
557 |
339 |
Antisense |
TATTTCGCTTTTTACCATACCAACA |
210 |
663 |
439 |
Antisense |
GAAGAACTGCTCGTGAATTATGGGC |
136 |
341 |
470 |
Antisense | |
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Affymetrix Proprietary Database |