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[172134_x_at]

Description F59D8.B /REP_DB=WormBase Gene ID /WP=CE20901 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF35967.1
Cluster 6grp_total > 99      4grp_total > 16      6grp_cgc > 79      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S5      4grp_rule_based > L4      

Scale

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G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 34.4
(-3)
A
100.3
(1.8)
A
54.1
(-1.6)
A
117.2
(3)
P
83
B 32.8
(-3)
A
90.6
(1.3)
A
83.4
(0.8)
A
113.7
(3)
P
81
C 53.7
(-1.3)
A
17.3
(-3)
A
92.3
(0.6)
A
143.6
(3)
P
126
avr 40.3
(-3)
69.4
(-0.9)
76.6
(-0.4)
124.8
(3)
85

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1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7474
1 2 3 4 5 6 range
A 94
(-2.9)
A
29.3
(-3)
A
17.7
(-3)
A
60.7
(-3)
A
7092.7
(3)
P
5385.8
(1.6)
P
7075
B 42.3
(-3)
A
30.8
(-3)
A
6.7
(-3)
A
12.8
(-3)
A
5274.8
(2.6)
P
5608.4
(3)
P
5602
C 39.1
(-3)
A
71.3
(-3)
A
13.9
(-3)
A
11.6
(-3)
A
7480.9
(3)
P
5464
(1.4)
P
7469
avr 58.5
(-3)
43.8
(-3)
12.8
(-3)
28.4
(-3)
6616.1
(3)
5486.1
(2)
6603
No Scale

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G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 12.5
(-3)
A
21.8
(3)
A
14.1
(-2)
A
17.2
(0)
P
9
B 10.5
(-3)
A
22.4
(2.2)
A
19.3
(0.9)
A
24.2
(3)
P
14
C 17.8
(-0.2)
A
5
(-3)
A
32.2
(3)
A
24.2
(1.2)
P
27
avr 13.6
(-3)
16.4
(-1)
21.9
(3)
21.9
(3)
8

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1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2419
1 2 3 4 5 6 range
A 17.3
(-3)
A
10.4
(-3)
A
3.8
(-3)
A
15.4
(-3)
A
2140.3
(3)
P
1311.3
(0.7)
P
2137
B 14.7
(-3)
A
10.3
(-3)
A
1.6
(-3)
A
3.4
(-3)
A
2143.1
(3)
P
2091.4
(2.9)
P
2142
C 14.5
(-3)
A
21.8
(-3)
A
3.5
(-3)
A
2.3
(-3)
A
2420.7
(3)
P
1829.1
(1.5)
P
2418
avr 15.5
(-3)
14.2
(-3)
3
(-3)
7
(-3)
2234.7
(3)
1743.9
(1.7)
2232
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172134_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19596
Sequence Type Exemplar sequence
Representative Public ID F59D8.B NCBI
Target Description F59D8.B /REP_DB=WormBase Gene ID /WP=CE20901 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF35967.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076211(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_076211 NCBI Caenorhabditis elegans VITellogenin structural genes (yolk protein genes) family member (vit-4) (vit-4) mRNA, complete cds. 11/11 A 
SNAP00000036909 ENSEMBL cdna:SNAP chromosome:CEL140:X:3558880:3564326:-1 11/11 None
GENEFINDER00000036913 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3558966:3564326:-1 10/11 None
F59D8.2 ENSEMBL cdna:known chromosome:CEL140:X:3558850:3563952:-1 gene:F59D8.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076212 7/11 Cross Hyb Matching Probes A 
NM_076188 7/11 Cross Hyb Matching Probes A 
SNAP00000016179 7/11 Cross Hyb Matching Probes None
GENEFINDER00000016190 7/11 Cross Hyb Matching Probes None
GENEFINDER00000029426 7/11 Cross Hyb Matching Probes None
SNAP00000029419 7/11 Cross Hyb Matching Probes None
C04F6.1 7/11 Cross Hyb Matching Probes A 
F59D8.1.2 7/11 Cross Hyb Matching Probes A 
F59D8.1.1 7/11 Cross Hyb Matching Probes A 
F59D8.1.3 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3403457-3408542(+) 92.18 92.18
chrX:3558880-3564327(-) 100.0 100.0
chrX:3567445-3571257(-) 68.5 68.5
Public Domain and Genome References
Gene Title
Gene Symbol vit-4
Ensembl F59D8.2
Entrez Gene 180646 Entrez gene
SwissProt P18947 EMBL-EBI
WormBase CE26817 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CHICKEN:GGA.4125.1.S1_AT vitellogenin I gga
HG-U133_PLUS_2:239061_AT tetra-peptide repeat homeobox-like hs
HG-U133B:239061_AT tetra-peptide repeat homeobox-like hs
U133_X3P:HS.216699.0.A1_3P_AT tetra-peptide repeat homeobox-like hs
HG-U95E:71466_AT tetra-peptide repeat homeobox-like hs
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6869 lipid transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5319 lipid transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK09074 Vitellogenin structural genes (yolk protein genes) protein 4 [Caenorhabditis elegans] ref|NP_508612.1| VITellogenin structural genes (yolk protein genes) family member (vit-4) [Caenorhabditis elegans] sp|P18947|VIT4_CAEEL Vitellogenin 4 precursor 0.0
blast AAK09075 Vitellogenin structural genes (yolk protein genes) protein 3 [Caenorhabditis elegans] ref|NP_508613.1| VITellogenin structural genes (yolk protein genes) family member (vit-3) [Caenorhabditis elegans] sp|Q9N4J2|VIT3_CAEEL Vitellogenin 3 precursor 0.0
blast AAA83587 Vitellogenin structural genes (yolk protein genes) protein 5 [Caenorhabditis elegans] ref|NP_508589.1| VITellogenin structural genes (yolk protein genes) family member (vit-5) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001846 EMBL-EBI von Willebrand factor, type D 7.2E-42
Pfam IPR001747 EMBL-EBI Lipid transport protein, N-terminal 1.0E-126
Pfam IPR001846 EMBL-EBI von Willebrand factor, type D 7.2E-42
Pfam IPR001747 EMBL-EBI Lipid transport protein, N-terminal 1.0E-126
Pfam IPR001846 EMBL-EBI von Willebrand factor, type D 7.2E-42
Pfam IPR001747 EMBL-EBI Lipid transport protein, N-terminal 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000036909 1 84-106
GENEFINDER00000036913 1 96-118
Sequence
Target Sequence
>C. ELEGANS:172134_X_AT
accttattgttattcgtcttccacatggagaggttcgtttcgatggatacactgtcaaga
ccaacatgccatccgttgcttcacaaaaccaactttgcggactttgcggaaacaatgacg
gtgagagagacaatgagttcatgaccgctgacaactacgaaactgaggatgttgaggaat
tccaccgctcttaccttctcaagaacgaagaatgcgaagttgagaaagaccgcatctccg
agaagaagaactacaaaaacaaatggaacagagaagagaagaagtccgactacgagagca
gctccgactacgagagcaactacgatgaaaaggaaactgagaaggaactcgtcaagaaga
ccctcatcaaggagttctccaaccgcgtctgcttctccatcgagccagtctctgagtgcc
gccgtggactcgaatccgagaagacttccaacaagaagatccgtttcacttgcatgccac
gccacagcaagaacgcccgccgtttcttgaaggaggcccgtgagcaaaccgtcgccgact
tggtcgatttcccagtctcctttgttgagtctg


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
ACCTTATTGTTATTCGTCTTCCACA 564 87 4523 Antisense
GGTTCGTTTCGATGGATACACTGTC 613 503 4554 Antisense
AAGACCAACATGCCATCCGTTGCTT 689 153 4579 Antisense
GTTCATGACCGCTGACAACTACGAA 60 445 4659 Antisense
GGATGTTGAGGAATTCCACCGCTCT 302 513 4689 Antisense
CCGCTCTTACCTTCTCAAGAACGAA 318 263 4707 Antisense
AGAAGTCCGACTACGAGAGCAGCTC 346 75 4802 Antisense
GGAACTCGTCAAGAAGACCCTCATC 389 529 4866 Antisense
GACCCTCATCAAGGAGTTCTCCAAC 40 383 4881 Antisense
AAGAAGATCCGTTTCACTTGCATGC 62 153 4975 Antisense
TTCCCAGTCTCCTTTGTTGAGTCTG 577 697 5071 Antisense
Sequence Source Affymetrix Proprietary Database